Chr:
Chr7
Start:
28155241
End:
28157700
Strand:
-
Ref_name:
LOC112939601
Sequence
(XR_003243360.1):
GCGUACGAGUACGUUUCUGAUCGAUGAUAAUUUGAGCUGCAGAUCAGAUCGAGAUGAUGCCAGAUCUCAAGGGUACUGAUCGAUCGUGAUCGAUCAUGCAUGUAUAUAUCGAUCAGGACAGAUGCUGCGUGACUAUUAUCUGUCUCUGGCGUUGCAACCUUGGCUCCAUCUAUCGGUUUGAGUGCAGGAACUCAUCUUUUUGACAGACAGCUAGGCAGGCAGUCAGCUUAAGCCGGCUGUUCCAUGAUUGUGCCGGGCUGGAAGGAAGUUUGUGGACGACAAACUCGAGCGUUCUGCCGGCGGCUGGCUCGCGUGAGGACAGGAUGAUGGCCAUCAUCGACCAUCUCCUCCUCCUCACCAGACACCAGAGUGCUUGCUCCCGGAAAAGCCGGUUUAAAGCAGCUCAUCAUCUGGUAUAUGCAGAUACCACCACUAGGCACUAGCAGUAGCAUUAGCAGGAUCAGGAUCUCUUUCUUUCGAUCUCCUCCAUCCACGCAGCGCAGCAGAUCGACUUUACACUUUGCUGUCUCGUCUCCGGUGCAUCAUCAUCUUGUGCCUCUUGACAGUGCAAGGAAAAUCAAUGGAAAUUGAACAAGUCACAUUGCUGCUCUCUUGGACAUUGCAUUGCUGCCAUUGCCCAACAGCCAACAGACAUGAAGAUCUUUGUGCAUGCAUAUGAAUCAAUGGAAGUACAGUAUAUAUGGAUGUUGCCAAGGUGUAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.03%
ME_num:
MEP:
19.72%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
2.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.88177279993832 | 0.0349642908018147 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.43382571025703 | 9.84210991361013e-05 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.50263343634896 | 0.0176921730561707 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.29176728179651 | 0.000596963784353509 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.6196795031781 | 0.00374573583485886 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.82502245025277 | 0.0225990650567733 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.70144974844446 | 0.00211753544242509 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.11363712578822 | 0.0404451074695825 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.16318921736151 | 0.0120254571314458 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.94755075500574 | 0.00861489103607594 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.94147861953917 | 0.00125019310339473 |