Chr:
Chr7
Start:
23236884
End:
23237891
Strand:
-
Ref_name:
LOC112939600
Sequence
(XR_003243359.1):
UAGUUCAUUAAUUAUAUGCUAACGAUUUAUAUCUUUUUCGUGCAUCUAAUUAGCUAGUCGUCUUUAAGUGCUUAUACAGAACACGCCCUGAGCCAGCAUAGUGUGGCCGAUCUGCUCACGCAUGCAGUACAGCUGACAGUGAGGCUGCCACGAGUGACUGGCAGACAGACAGCUCCAGAGGCUUCAUCUCCAAGCCUGCUCUGCAAUGAAACCUCGAUUAUUCUUCUCCUCCUUCCCUGACCCCGUCCAACUCCAACCUACCGCUUUCUUAUUUUUUCCCCAAAGGUUCUCCAACCAAAUGGAUCGAUUAUUGCAGCAUCAGACCAGAGUCUAGUAGAGUACUUAACGCUGCGAAUUGCCAGGGAUGCAGUAGCUACAAACAAACAAUCUGGUUAUCGUCUGGUGGCCAUGAUUAGCAUCGCUAAUCAAAACAAAGCAUCUGAGAGGGGCCUAAUUGAUCAGGAGGAGAUGAGAUGAGAUGAGAUUCCUUGCCCUUGUUUAAGCAGGGGAGAGGGAGCAGUGUAGGGGCCACGCCGUCGUCGUCUCCACUGUCCAGUGUCCACUCGCAUCGCAUCUGGCUCUCUGGCUGGCAGGCUUGCAGCUAUGGGCAAAUCGUGGAGACCAUGCCGGUGUACCGCAGGAGAUGGCUACUUGUUGCCUUGUGCCCUUGUUGGCAAUGGCAAUACCUGGCUCUGUACUGGGUCUGGGACUCAUCAGUCUAUGAUUAGUUCUCUUCCAAAAGUUAAAAUCAGCAACUUGCUCGUUUUUCAUUUGCACGUAUUUCGAACAGUUAAAUAACGUGUUUUGUGUAAAAGUUUUGUAUACAAUUUUUUAAAAGAUCGAUUUAAACCAUUUUUAAAUAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.71%
ME_num:
MEP:
17.48%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.91121439640685 | 0.00313728411378262 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.83563780019902 | 0.000348902607649967 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.13273764098477 | 0.00224650658164559 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.94260948350168 | 0.00126614295849717 |