Chr:
Chr7
Start:
25059695
End:
25061572
Strand:
-
Ref_name:
LOC112939583
Sequence
(XR_003243332.1):
UUGUAUUCAGUAUGCAACAAACCCCCACCAUAUUUUCCGUGAUCUAGAGACCAUCCACUCCACGCCGGUUUUCCCGGAUCAACCACGAGGGAGAGGGCACGAGCGAAGGCUGGCGACGGUGGCGGCGCUCGCGGGCCGCCGCGCCAUGGAGAUCCACCGCUGCCCUCUGCGCCUCGCCAUGGAGGAGUUGCCGCCACCCCCGCCACCUUGUUGCGAUGGCGGGAGGAAGGACCACGGUCCACGGUGAGGGCCUCGGCCGCGCGUUGGUCUGGCAGCGGAACAAGGCCACGGCAGCCGCUUGAGUCUGUCAUCGAGGUCAGCCACAUCGACGCCGUGCUCCAGCGUGCUGCCGAGGAAGACCUCCUCCUCGGUGGUGGCGACGGUGCAGACGACGACGUCCUCUCCGCCGCGCUCUGGUUCCAGGCUCAUCGAUAUGUAACCUCUCAAAACGAACCACAUCCGCUUUUGGCGUCCAGGAUCUAGCCAUUGAAGGGCGGCUGGUGGCGGGGGCCUUGAUGGCUGAGGCUGAUGGUGCUGGUGGUCGGCAGCUCAUGGGUGCCUCAACAGCGGCUACAGCAUGCUUGCGUGAUCCGCAGCAGUUGUGGGCCAAAUGGAUCCAUAAAUGGUGGUGCUGUUCGAUCUUAGCGUAUAUUUUUUAUUAUUUUCAUGCAGCUGAGAUGACCAGGCAAGUUUAUUUAAAUUUUAAUAUAAUGAUCAAUGUAGCCACCAUGUUUGUUGCUACUGGGACAAACUUCUUCAGACUGAAUGUUUUGUUUUGAAUUUUACCUGUGGCUGCUAGCGUCAUCAGGUGCAGUGUGGGAUGGUGUGAUUGAGGCAUGGAACGAUGGCAUGUUGAUGAGCCAAUCGUGCUUCUCCAAUUGACAGCUUCGAGGGGCACAUCAAGAAGAUGAUUAUCCGUGAAUUCAUAUUGCGAAGAAGUGUGUUUCGUCAAGUUCAUUGGCGACCACUGGCAGGUGCUGGAGAAGAUUUUUGUUGUGCUAAUUUAUGUCUGCUUAUCUUCUACCAAUAUGAGCACUUUUCAUGGCUUGUGCAAAUUUGGUCAAUGAAGAUGGUAUAACAUGGUGCUUCCAUGGGACGACUAAAUGGGGAAGGCAGUCGACACCAGCGUGGUGGUGGUGUUUAGCUAGUUGUGUUGUCAUUGGCUGUAUUUUUCCUUUUCUUACAUCAAUAUGAAUAUGAAUAUGUUAAGAACCAUCGAUGUAAUGUAAUAGUAGUUUAGUUACUAAGAGAUAGUAUGUUUGAGAACCAUUGGUGUAAUUUAGUUACUAAGAGACAAAAUAUUAAGAACCAUCAGUGUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
42.48%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
9.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.43964015949438 | 0.00288416511928739 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.60466767853819 | 0.00117903833562521 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.81152938999081 | 0.00032482592218903 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.36938636521673 | 0.00558918044681416 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.32947455062596 | 0.002524787053339 |
| 6 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.4378071829852 | 5.1163742980329e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.00005684123412 | 0.0102967986760904 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.73927188844205 | 0.0440962812029493 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.57362992835746 | 0.0128832391779022 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.21980702321349 | 0.00643968377706253 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.39321092584197 | 0.043812857318424 |