Chr:
Chr7
Start:
28949580
End:
28952046
Strand:
-
Ref_name:
LOC112939582
Sequence
(XR_003243326.1):
CGCUGCUGUACCUUUUAAUGUCUGAUGUUUGCAGACAGUGGCUUGUCAGCCUUCGCUCGAGCGCUAGUGGUUGUUGAUCUGGGCAACAGACAUUGCCACUGCACCUCCCACCAAGUAGUUUCGAAAUCCCCUCAGAUUAUUAUUGAUAGGCACUUAAGUUUACCUAAUCCUUCCUUAAUUGGCAUCUAACAUCUUUUUUGCUGUGGCCAAUUCCCAUAAAGUCCCUUUGCCUACUGUACGUGUAACUCAAAAACAAUUUUAGGCUCUGUUGGUCUGCAGUAGGUCCACAAAAAUCAAAUAAUUAAUUCCACAUCUAUAGGAGUAUUAUGUUAAAUAUUUUGCCCUCUCUACUAUGACCACCACCCAAGUUUACAAAACUGAACAAUUUAUAUUUUCUUCAGUUACUAAAACCAAUUUAAAUACCCUCCAGCCGUAAGAACUUUUCCUGAAUCAUACAGAACAAUUAAAUUCAUAUGAAAUUGAUAUAUGUGCCUAAAGGGGCAUGAGAACUUCUCUUACACUAUAUUGGUUUUGUAUAGGAUGGAGGGAGUACAUGACACUUUGUAACGAAAGAAUGACCCUGUUAUACUUCUAAGGAGUUGAGGCACUGAUAGCUCCAAUAAUCGCCAAGAACUCGUCAACGAAGAACAGAGGGGGGGGGGGGGGGGACAGGCAGAGGCAGAGGAGGAACUGCAAGGCAGGCGUGGGCAAUUUACUUUUGAUGAUUGCGCAUCUGACAAGAGUGUGCAAGGACAGGCACUGACAUGAGGCACAUGGUGCUGAAUCAGUGAUGAGGGGCAGCCAUGUUGCAGCUGUCCAUUGGGUGCACUCUGGUGGCCCCCAUUCCUUUCGGGUCUGGUUCUUUUUGUUAACCCGACUCCUUCAAAAUGUACUCCUACUACUCCCUACUUUUUCAUCAGUUUUGUCACAUAAAUAAAAAGCCCAAAACCCGAACGACAAUUCACGCCUCCGUCUCCGUUGUUUCGAUGGCAGUUUAGCAGCUGCCGACGACGUCGGCCGGAGCGGAGGAGGAGGAGGUGUUUGAACCCAACACACCGCCGUGCGGCCGCGUCAAAAAUGUGUGCUGCCGCCGCAGCAUGUGCAGCUACAAUUGCAUCGCCGCGUUUGCGUAUCGUAUCGUAUCAUCACCGGCCUUGUCGUGUGUCCCCCUUUGUAUGAGCUGUUGUGGUCCGUCCGGUCCUAUGUUUGACAAACAAAACAUGCCAGCAGUAAAAAAAAAAAGUACGUACACACAAACUAGUCACGUACUGUACGCACUCCUACUGCAGUACUGCACUAGCACAACAAAGUAGCAAACAGUGGUAGCUAGAUCAAGCGAGUGACUUUGGCUUGUUUGAUCAACUUAAAAUUAUGAGAAACUGACGGCCAUUUUGGAUUAGUAUAUAUGACGGUUUUGUUUUGAAGCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.55%
ME_num:
MEP:
15.04%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
1.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.59494462700397 | 0.010103573798601 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.02830494490233 | 0.00153043221041738 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.34231516301183 | 0.000247943383046363 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.10539342816212 | 0.0247983995919484 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.50820506927363 | 0.00142813910610574 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.07734639897752 | 0.00266828299998191 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.18965906122227 | 0.0299079897211093 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.10801343100052 | 0.00256738572730983 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.69575422975398 | 0.00478828960118496 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.47564606360872 | 0.00759030229672618 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.44461068873541 | 0.0499550057545925 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.79553865982313 | 0.000751407776411108 |