Chr:
Chr7
Start:
6028413
End:
6028909
Strand:
-
Ref_name:
LOC112939570
Sequence
(XR_003243312.1):
CUGCUCUGUGUCUUCCUUUCUCUCGCUUACUCUUCCUCGGAAACUCUUUGUGCCUCUAUUCCUGCGCUAGCCACCGCUUCCCUGGUCCUAUUCACCUAUGCACACAGGUACACGGGAUGAGAAGGUGCCUCCGAAACGCUGUCUGCUUGAGAAUCUACACGGGCUCUCCUUCCUCUGCAACGCCAUGUCGACCGUCAACACCGACACCAACACCCGCACCAGUACUGGAGAAGGUAAGAACGGCAAUACCAACGGAGGCAACAACACCAACAAUGUCUCAACUAGUACUGGAGCAUUCUCCGGAUAUAUUCAUCCUCGUUUUAAACUUGCUGUUAGAUACCAUAGUUCCUGUUAGUAUAUUCAUGUUUAUCAUCAUGCCAAUCAUAUGUGAAUAUACUUGAUGUUUAUGCUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.95%
ME_num:
MEP:
22.15%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.81
Avg Expression:
2.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.0014734303897 | 0.00806307615258422 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.87489926752457 | 0.0180149304526979 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.76783179980456 | 0.0170809416768147 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.85560250020997 | 0.0237231375721253 |