Chr:
Chr1
Start:
22032368
End:
22034029
Strand:
-
Ref_name:
LOC112939441
Sequence
(XR_003243155.1):
CCCUCCCCUUUUCUCCACAUAUGAGCCGAGCUCCUCGAGCUCUCUCUCUCCUGUUAUGUCUAGCCACCACCGGCCACUGCCGAUCUCCCUCACCGGAGUGUUUCUGGCCAAGCCCUUGCGCCAUCGGGUUUGCCUCGACGAGGCGAACUCAUUUUCCUAGUUUCCCCUUCCUUUCCCCUUCCGAAACCAACCAUCACAGCCACCUCCUCUUGUUGCCGGAGCAAGCUCUUGCCUUCGCCGUUCCGGUCUCCUCCCUAACCCUCUCUACCGGAAACCACCCUCCCUGAGUGCGCGUUGCUCGGGAACGCGUGUUGCCGCCGGCGUCACAGUCUUCUAUCCACCGGAGAGCCGGCGCCCCUCCUCUCCCUUCUCUCUGUUUGUUCGUGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGUCUGACAGAGUCUGUUAUAUUUUGGAUGGCAACCUGUGGUAUUUCAAGGAUCGGAUAAUCAGGUUGCCUAUCUCGGAUUUAUUUGCGUUGGAGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.89%
ME_num:
MEP:
41.06%
HE_num:
HEP:
15.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.80
Avg Expression:
7.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.75669759983247 | 0.0143162276811934 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.32830018571067 | 0.037563871105208 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.43673383852207 | 0.0177800110665126 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.64051344998585 | 0.0453771428180453 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 3.40005901016811 | 1.50124433402479e-09 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.26502338639215 | 0.000263056778596193 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.89507816643046 | 2.02581339666196e-13 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.77108810280719 | 1.57649991760252e-15 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.42357661924169 | 5.1232889090191e-05 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.94711093228057 | 1.03189902063668e-25 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.53843038793483 | 5.40754581701623e-34 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.86611298906459 | 5.52340586964735e-06 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.76969031843131 | 3.20188979058522e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.7974335472968 | 3.84936222226893e-35 |
| 15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.88538207110226 | 6.74283352020854e-29 |
| 16 | 9311 // leaf // control--/--9311 // leaf // salt | 1.7452575602516 | 1.43530821503977e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.9990373433153 | 0.00328013669714025 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.82765798747208 | 0.00269726956538681 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.04982465471305 | 6.5222805468288e-07 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.26626248877332 | 0.00191126962839618 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.21522633745736 | 0.000949921710431255 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.64929003107016 | 0.000145098772270493 |
| 23 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.60074552611034 | 0.000688026333869717 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.59824704300347 | 0.000657601232121855 |
| 25 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.60065694571866 | 0.00069636940282173 |
| 26 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.60056247412994 | 0.000690497684892484 |
| 27 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.90186634770374 | 1.03213025478494e-07 |
| 28 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.61137953333356 | 0.00095004242358096 |
| 29 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.11567458773363 | 3.05326160620354e-06 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.73607989737183 | 0.00955157422757492 |
| 31 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 2.03024505495638 | 0.0115440194117847 |