Chr:
Chr6
Start:
20422154
End:
20424563
Strand:
-
Ref_name:
LOC112939424
Sequence
(XR_003243127.1):
AAAAAAAAAAUAGAGGAAAUCGAGUGCGGGCGGUGUUUCUUUUUCCCGUUCCGCUCGGCGUCGGCUCCGACUCCGACGCCCGCAGCUGCCUGCGCCGAUCCCCAUCCAUCCCUCCCGCGAGUAAUGGCGCCGUCGGUUGUCCCUAUGCUUCCGCCGCAUUCUGGUUUUCAGGACCAAAAUAAUGGGGGAGAUUAGUUUAUGGUCUUCAAAAUCAUGCUGAAAACAUGUUGUAAAAUUUGAGAUGUCUCUGAAGUUUAGUUGAAUAAUUAUGCAUAUCCUGCAUGCUGCCAUAUGCUGAGUGAGGUAUUGACUGAACACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.55%
ME_num:
MEP:
12.6%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
13.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.18990235865363 | 0.000494351884046279 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.37718241605995 | 0.000570400889518588 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.0407491598971 | 0.0418917721525237 |
| 4 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.23551158634593 | 0.0039330721509521 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.79753584820142 | 0.0446958373961278 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.76664466960676 | 0.0417181871331298 |