RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939420

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

21540494

End:

21542950

Strand:

-

Ref_name:

LOC112939420

Sequence
(XR_003243123.1):

CUUGAGAUCUUGCAGGUCAAUUUGUCCCUCCUGUGGCCAUGAACUUGGAGCCCUAUUCUCUGGAGUAGAACUUUGUCAGGAAAACCUGAACUGCUGUCAGCGACAAAGCAAAGGAGAGGCUGAGACCCGCAAAGCCUGGAAAAGUUAACAUUGGAAGUGUUAUACAUCCUUGUUGGAUGUAGAGGCCGGGUUUUAAUUAAUCCAUUAUCUAAAAAAAAAAACUGGAAGCGUUCAUUGUUCAGCAUACUGAAAAUACCAUUGUAAGAUGAACAUGUUAAGGUGUAAUGGCUUAUGUACAUACAUACCUGGUGAGACUGCUCCUGGAGGAGCCAAAACAAGGAGCAGUGCUGCUGUUAGUAGUGUCAGGCUCUGCAGUGCUUCUACUCUUAUGAGAACCCACUCUUGCGCCGCAACUGUGUGGAAGAACAAUGUCGCGUCGGUAUCGAUAAGAAGUAGGUUAUUGCGGAUGAACCUGUCUGUUUCCCCAAAAGACCUGAUGGUCACCACAGCAAGAAUUGAUUCCGCCGCAUAGUUCAUGACUGGUGCCUUUGUUGUUCCAUUGAUUCUUGCUAGAUCUCUUGCUGAGGCCACGUAGUGCCUCGUCAAAGGUUUUAAAACAAACGUGAGAUCUUGAGUUCAGAAGGUAACAUUUGAUCUAUUUAUUCAUCUACUGGUUUAAUUAACGAUGGUAGUUGUUUGCAGCAAUUAGGGGACUGACCUGAACAUAUGCCACAGUAAUUGUAACUGGGAUUGCUACAAUUAGAACUUGCCAAGUUACAGCCCCUGUAACCAGUAUUGUUGUGAUGAGCUCACUAGCGCCAACGACGACAUAAGCCACGGAGUAAGGUAUGUCAAAGUCCAGGAUGCUUAAAUCUGAAGAUGCCUGCAGAGAAUAAAAGGGCUACAGUCAGUCCAUACCCUUGUCAAGAUUCUUCCAACCGGUGUUGAAUCAAAGAAAGACAUGGGGGCCUUGAACACAGAAUCCAUUAGGCCGGUAAAGAAUGCUUUGGAGGCCUUGAGCCCCAACUUAGCUGCAUAAAGGGUUCUGAUAUAGGCAAAGCAGCAGCUCAAGAUGGACAGCCCUGAAUAUGCCCCUACCAGGAGAGCACUACUGACGUUCAUCUGGACAGCCACUGCCAGCCAGAAUGUGGCCAUCAUCUGGAAGGAUGUGAAGAGCACCUGAGUAACACCCAUCACACAGAGAUGUGUGAUUCCCUUGGACACAUUGAUGUAGUCCUUAUAUGGCUUCCAUCCAAGAAGGUUGUCCUGAUGUAUUUUCAUCAGUCACAUUUUGCUCCUGGACUUGGCUUUGCUGGCUGGAAUCAUCCAAUGCUGUGAUUGAGGACUUGUGAGCUGAGACAAGCUUCUCAAAUGCUGUCCCGGAUUCCAUUAGCUCUGCGUAAACACCUUGUUGUUUGACAUAACCAUCUUCCAUUACCUGUUGAAACAAUGGCAGAUCAUUCAUCUGAAGGAUCUUUGAUACCCUUUGAUAUGGCUAAAUGAUAGUCUGAAGAUCAACUUACCAGAAUCCGAUCAGUCUCGGUGAGAAAUUCAACCUGGGAGUGCAUCCAUGGAUGCAGGUCAAGGAGCACCUCUUACAUAGAACAGAACCGCAGCGGUGUGCGCAUCGACCGCGCUGAAAGGAUCAUCUAGGAGGUCUCCAUGGUCGAAGUUCUCGAAGGGCUUCCCGAAGAGGAUGUUGUCGCGAACAGUGCCACUCUAUCCAUGAGUUCUGGGAAACAUACGCCACUGUGCCAUACAACUCCACCUGAAAAUUGAUUGUAGUUUUGUCAUGUUCAUAUUUUAGAAAACAUAGAUUUGUCAUUGUCAUUUUUUUUUUUGUAUAUGAACAUGACAAGACAAUCUUGUGUUUUCUCCUUUCAUGGUAAAAUGAAAAGAAAGGAGAUAAAUAUAGAGUCGAAGAUUAUCUUGAGUCUUUUUUCAGGGGAAAGUAGAAAGUUUUUAGUGAUAAUGCCCUAUUGUUUUUGCAUGAAAUCUAAAUAAUUAUGAGAAAUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

296

LEP:

60.16%

ME_num:

149

MEP:

30.28%

HE_num:

46

HEP:

9.35%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.85

Avg Expression:

8.73

Tip: OSA-LNC112939420 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.654413835444480.000512944547724573
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.228656992230290.00936697868270892
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.015368694320114.67301938292649e-07
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.148705538810596.62551478787515e-07
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.18688020253750.00883136378086739
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.373577033082960.00478868022575449