RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939404

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

19651252

End:

19652528

Strand:

-

Ref_name:

LOC112939404

Sequence
(XR_003243097.1):

CCUUUUUUCUUUUUCCCCCACCUUCUUCUACCUCCAGCUCUCUCUCUCUCCUUCUUGAGCUGCAAGCCUGGGGAAGCCAAGCCCCAAGCCCACGUGCCGCCUCGGCCUGGCCUCCUCCUCCUCUCUGUGUCGCCAGCCCAAGCCACCGCCGACCGAGCCCGCGCCAGCCGCGCCGCAAGCCCACACGGCCGCCGCCAAAUCCCGCAAGCCGCGCCGCCAAAUUCGGAGCCGCCGCCUUUCCAAAGCUUGCGCAGUGCGCCCUAACCCUAGCUACUCCCUCCUCUAUAAAUACCGUCGGCCCCCGCCCCCUUUUCCCCCUUUUUUUCCAAAGCCGCCGCCAUCUCCACCGUGAGCAGCCGCCGCCGGGAGCCGCGCCGUUAUCGUCACCGUCUUCCUACCGCACCGCAGCCGCUGAUGUUGGAGCGGAAGAGCAGUUUGCUCCAGAAGACGCUGUGCAAGGACAAUACUGGGAUCAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

448

LEP:

91.06%

ME_num:

41

MEP:

8.33%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.95

Avg Expression:

1.31

Tip: OSA-LNC112939404 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNC112939404 is not a differential expression ncRNA.