RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939399

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

19287255

End:

19290528

Strand:

-

Ref_name:

LOC112939399

Sequence
(XR_003243086.1):

UUGAUUGAGCGAGUCUUGUUCUCUGAUCCUGACGACCUACUCUGCUCCAGAUUGGAAGGAAUGCGGCACCCUCACCUUUACACACCGUUAGACCUGCACCUUCCAAACUUCGUUCCUCUGUGAUUGUCACAAGGGGAAAUCAUCGUGCCCUACCUGGGAACCUCCAUCUUUAUCGUCUUUGCCAUCUGGUUCAUCUCUGGAAGAUGUGGAGGCAAGCUGUCCAAGACUCCAAGACCGAUCGUUUGCUCAUGUGCUGGUGGGCCUUCACCGGUCUCGCUCACAUAAUGGAGGGAACCUAUGCCUUCGCGAGCUCAUGAGAAGAAGGUUAAAGUCCUCUUCAGCAAUCAAAACCCCUCUUUCUCCGAUGAAGUUUGGAAAGAGUACAGCAAAGGCGACUCCAGAUAUGUCGCCAGAGACCCAGCAACCGUUACAGUUGAAGCAAUUACAGCCGUGUUGGAAGGCCCUGGUUUACUCCUUUCUGUCUAUGCCAUCGCACGCCAGAAGUCUGACAGCCAUAUCCUCCAGUUCACUGUCUGUCUUGGUCAUCUCUAGGAAUAAGUUCACCGGAGGUCCCUCAACUUAACAGCGAAAUUUUUUGAGGCCCCUUAACCACAAAACCAGAAAUGUUUACCCCUGAACUUACUCAAACCGUUCACCGGAGGUCCCUCGGCAGUAUUUUUGCCCGGUUUUGCUGACAUGGCAUCCUAGUCAGCAAAAAAAAAUUAAAAAGGUACGUGAGGCCCAUAUGUCAGCUGCACAUAUUUUUUUCUUCUCUUUUCUUCUUCUCUUCUCUUUUCUCUUCUCUCCUCUCUCUUCUCCUUCAGGCUGGCGGCGGGCGCAGCCGCGAUGGCUGAGCGCGGCAGCAGAGCGGUGGCGGGCUGUGGGCGGAGCGGACGGCGGGCGAGCCCGGCGGUGGAGCGGAGGCAGCGGAGGCUACGGGCGGAGCAGCCGCGUGCCGUGGCCGCCGUCGUCGUCGGCUCCCCAUCGUCGUCGUCGCCGUGGGCGAGGCUACACGGCGCGGCCGUUCGGCGGCAUCGGCCAGGCGUCGCAGUGGCCGUGCAUAGGUGGCUCGAAGUGCCGGCUGACGAUGCACCCCAGUCGCUCACGCUCCUCCUGUGCCGCGGCUGCGGCAGUGGUGGCGGCGGCAGCGUCGCCGGCCUGAUCCCAUGGUCCUCCCGGAUGCCCAGCUCGCGCAGCUGCAGCAGGAGCGUGUCCACGCUCGGCGUGCCAUCGGCGUCGUGGACGGUGGUCGGCGCGGGCGCGGUAACCCUCGUCGUCUUCGUUGACGUCGCGGUAGCACUUGACGUCGUAGCUCAUACGCAUAUAUUCCGGGUACAGACGGCCGCAUGUACAUGCGUCUUCGUACGAGCAUAUAUAUGCAUGCAUGGAGACGACCAGCUAUAGCCUAGCUAGCUUCUUGUUGGUUUGCCGCCCGAUAACAUGCAGACGUAUAUAUUAGCCAAGCAUGUGUAUAUGGCUGAGCACACUCACAUGUAUAUAUGCAAUUACGUGCAGCGGAGGAGCGCGGAUGCGGGGGUGCAGUGGAAGGCGAGCGCGGCGGAGGAGCGGCGGCGGGCGAGCGCAGCGGUGGGCAAAGCAGCGGAGGGCGAGUUAGGCGAAGCGGAAGACAGUGGAUGGGACGAGGAGCUCCCCCGUGCUCGGCCGCCACCACCGCCGUGCCCCCGCGGGUGGCCGACGAUGCUAGGAGAGGCACCACCGGCGGGGGAAGGGGAAGAGGCAGAGGAAGCGAUUGUUUCUUGGUCGCCGGCCGCCUCCCCCUCCCUCCCAAACUCGCUGGCCGCCGCGCUCGCUCGCCUCCGCUCCGCCGCCGCGCUCGCACUCCGCUACUCUGUCCGCGGCCUGCUCGCGCUCCACUGCUCGGCCCGCCGCCGCGCUCGCGCCUUCCGCUGCUCCGUUGCCGCGCUCGCCCUCCGCUACGCUGCCCGCAUCCGUGCUCGCCGCUCCGCUCCGCCGCCGGACGGCCGCGCCGCGUAGCCUCGCCCACGGCGACGACGACGGCGGCCACGGCGCGCGGCUGCUCCACCCGCAGCCUGAAGGAGAAGAGAAGAGAGAGAAAAGAAAAGAGAAGAGGAGAGAAGGAGAAGAAAAGAGGAGAAAAAAGAUGUGAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

460

LEP:

93.5%

ME_num:

27

MEP:

5.49%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.96

Avg Expression:

2.14

Tip: OSA-LNC112939399 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA7.962481368858763.93167482816934e-10
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA6.598435106638022.50567153935803e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA6.096388672037991.72902975224866e-06
4Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-2.939636815855020.0182839725048524
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA3.512256495746860.0224874277332252