Chr:
Chr6
Start:
13681665
End:
13692695
Strand:
+
Ref_name:
LOC112939391
Sequence
(XR_003243075.1):
UCAGAUCCUGGUCCAAGAAGCAAAGAGGGAGCAGAGGACUCGGAGGUUAAUUCGGUUUCUUUGGUCGCGGAGGGAUGAAUCUCGUCCCCGGAUUAGGGCUCGAGGGUCUAUAGACAUGGAAGGGAGGUUUGAUGCAAGAGCCUAGUUGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.15%
ME_num:
MEP:
1.02%
HE_num:
HEP:
64.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.63
Avg Expression:
26.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.2153583041265 | 0.0360456035070871 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.3657478587529 | 0.020277653510287 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.52074624303124 | 0.0267873905412537 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.24610681085496 | 0.0207535926373113 |