Chr:
Chr6
Start:
8939304
End:
8942168
Strand:
+
Ref_name:
LOC112939385
Sequence
(XR_003243063.1):
CCCACUAAUCUCUCCCUCUCCCUCUCGUCGAAAUUCCAAUUCCACUCGCCUCGCCUCGCCUCCCCCACCUUCCGAUUCGCUCGCGUAUUAUAUUGCGCCGUCUCGAGACUUCUAGAUCCUUCCAGUGGAACCCGCCGCCGCUUCUGGAUCCUUCUCCUGCCCCUCAUUUUAAGCGCCACCUCCCCCGCCCCCCCACGCCACCGACCGAGCUGCCGGCGGAGGUGCGAAGCCAUCGAGUUAUUGCAUAUGGUGGCACCAAGCAUGAGGUUACAACUGCAUUACUUGCAAGGGAAUCACAAGUCACAAGAAACACAUGUUAUUACAAUGGAUAAUCAAUGGGUCAUCAUACUAUGACUUUCUUGCAAGUUGUGCAGUUGUUGCCUCAAGCUUGCUGCCUCCGUCUGUCAGAACUGCAACUAAGCUAGGAAGUUCAAUCAGUUUUUUUUUUUUUUAUCUUGAACAGUAAAUUCAAUGUUGACAAUUAAUGUAGUAAUGAUUUCUUAAGGAAUGAAUACUAAUUUUGUGUUCAUGGGGAUCGAUAGUCUUUUUUAAACAUCAUGUUUAAACACGAUCAUUACUGGUGCUUUGAGUAGAGCCUAAUACUGCAUUACUAUUUAUUGCUUGCUGUUAUAGUUUGUUACGUACCAUGUCCAUUCCUUAAGGAAGCUAACAAUAGAUCUAUCUUUUGUAUUUUCCUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.98%
ME_num:
MEP:
39.84%
HE_num:
HEP:
48.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.80
Avg Expression:
40.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.11628103626385 | 1.10400724745765e-43 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.17627960251837 | 5.74236858134928e-24 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.13779331103073 | 2.75893470131433e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.05238414993942 | 4.22518779999246e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.5097789243599 | 4.76955761537355e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.57357145555722 | 6.11603998008552e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.29432302289072 | 0.00769424064431264 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.45981225155231 | 6.96362883378118e-12 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.1004851436754 | 1.2726186311708e-23 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.21223204199066 | 6.13866423198278e-08 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.7093771596312 | 7.3760958391726e-06 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.45341629674477 | 5.06634189041379e-09 |
| 13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.2902539810263 | 2.02444523349603e-08 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.11842566658163 | 6.26098021827283e-100 |
| 15 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.92819589476247 | 0.010700800445342 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.36236835287249 | 0.0446267544485218 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.92211031181694 | 5.97774651312304e-18 |
| 18 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.54352031684378 | 0 |
| 19 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.76270693051576 | 1.11453226061428e-116 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.64863624165389 | 6.23306872807407e-15 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.89316532404343 | 7.36124706257396e-44 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.2162602233148 | 0.0172825933477422 |
| 23 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.54095137670684 | 0.000178388150407518 |
| 24 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.32115016892341 | 1.6923571261017e-92 |
| 25 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.10298866512424 | 0.0367568777107243 |
| 26 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.2543660671081 | 0.042761096759072 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.70480874688418 | 2.10527701764312e-31 |
| 28 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.16244759861692 | 0.000888843715035818 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.56731163868945 | 2.74248622045328e-15 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.48980448832594 | 0.00307845720865682 |