OSA-LNC112939354


Function Link


Basic Info

Chr:

Chr6

Start:

27674047

End:

27675797

Strand:

+

Ref_name:

LOC112939354

Sequence
(XR_003243004.1):

AUUUCGGUUAGAAAACGUAAAAUAUGUUAAAGUUUCAUUAAGUGGUUAGGUCGUCAUUAUCGUCCUAAUGAAAUUAUUGCGUACUGGAACCCAAUGUGAUUAGUCAAUAACAGCUCAUUCCCACUAUCUAUAUAUGUAGUACAUUUUUCGAUCUAUUCCAGGUACAAGAUCAACAGUUCGCACCUUGAUUGACGCUAAUUUUAGCCCAAAAUACUCCCACCAACAAAACAAAAAAAAAGAAGAAGAAGAAAUUACUACAGCAAUCAGCCUCGAGAAGCAGCAAAUUUCCCAUAGGAAUUUCACUGUAAACAUCACGUUGAAACCAACGGCGCCGAAUGCGCAAAAUUAUCAGCAGCUGGAGAUCGAUCGAUCGAACUCAUCUAAGGCGCUGUGCAAGCAAGGACAGUCCACAGAGACGGAUACGAGAGCGUACAUCACAGUACAGCUAAGCUGAAUGCAUCGAGCACGCGCUGAACGGCAGCAUCACGAGGGGUGGGUGGGCGAGAACGCGAGGGACCAUACCUAGCUGCAAGUCUUGAUGAGUCGACCUCCAUCCAUGCAUGGCGCUCGCAAGAUUUUGUCUCACUGCCCUACCGAAAUUGCCACUGAUGAUAUACAUAUAGAUGGAUGGAUUGACACAAUGCCAGAAGUAUCGUUUGAGCACGCAUUUUUCUUUGGUCAGAAGAUAUUAGUUCUUGCUGGUGUGAGAGGCUGAAGCUGCCAGCAUGAUCUGGUCCAUGAGUUGCACUGCUGAAUAUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGCAUUCGUUGUUCUGAGCUAUGUAUGGAUUUGAUCGGUUUGAAGGCAUCCAUGUCUUUAAUUUCAUCGAUCAGAUCAUGUUGCAGCUUCACUCUCUCACUACCAGCAAAACCAUCUCAUCGGGGCUCCAGUCUUCGAUCACAGCAGGUCAUCACUAUAAGCUGACAAGCUAUAUGAUGCAACCUUUUCCCGAACUUCUAUGGACUAUGGAGAAAGGAGGUCAGUGUUCUUUGUUCCUGUAACGAUUAAACUAUUAGCCAUAUACUUCUCAUUUUCUCUUGAACAUGGUUUUCUUCUUUGUGUGCACUUGAUGAUUUGAUACAGUACGAUAUAUUGCUAUCUAAUCUCACAACUGUUGAUACAUUCUCAGUUGGAACUCUGAGCAAUUUUGUCCCCCAUUUCCUCCUCGGACACAUUUACUACACUGCUAUAUAUACAUUUUCACAAAAAAACAAUGCUCCAGGGACAUUGUUAGUUCAUCUGAACUUGCUUCUGCAGUUCUACAUCUGUACUGUUAAGUGUUUCAGGCAACAUCACGACAGGAGCCAUAAAUCCUUUCAGCUACAUCUAGGGAGCGCAACUGCUGUCCUCGACACUGUGACAAUAUUCUACAGAGAAUGUGAUUUUCAGAAAAGAAAAAAAAAUGCAAAGCAUUGGCCAUUGGCCGCUUGAAAUGGUUUUUGUUUUUUAGAGAAAGCAUUGGCCAUAUGCAUGUGCUCCUACACGAUUUUAGCGACUCCAUAAUCACAAUGUGUGCUUCUCAUGUUCAUCUUCCGGAAAGCAUCCUCUUUCCCCAAAAUAAUAGCUAAUAAUAAAAUGACUCAUAUCACAUU

Sequence
(XR_003243005.1):

AUUUCGGUUAGAAAACGUAAAAUAUGUUAAAGUUUCAUUAAGUGGUUAGGUCGUCAUUAUCGUCCUAAUGAAAUUAUUGCGUACUGGAACCCAAUGUGAUUAGUCAAUAACAGCUCAUUCCCACUAUCUAUAUAUGUAGUACAUUUUUCGAUCUAUUCCAGGUACAAGAUCAACAGUUCGCACCUUGAUUGACGCUAAUUUUAGCCCAAAAUACUCCCACCAACAAAACAAAAAAAAAGAAGAAGAAGAAAUUACUACAGCAAUCAGCCUCGAGAAGCAGCAAAUUUCCCAUAGGAAUUUCACUGUAAACAUCACGUUGAAACCAACGGCGCCGAAUGCGCAAAAUUAUCAGCAGCUGGAGAUCGAUCGAUCGAACUCAUCUAAGGCGCUGUGCAAGCAAGGACAGUCCACAGAGACGGAUACGAGAGCGUACAUCACAGUACAGCUAAGCUGAAUGCAUCGAGCACGCGCUGAACGGCAGCAUCACGAGGGGUGGGUGGGCGAGAACGCGAGGGACCAUACCUAGCUGCAAGUCUUGAUGAGUCGACCUCCAUCCAUGCAUGGCGCUCGCAAGAUUUUGUCUCACUGCCCUACCGAAAUUGCCACUGAUGAUAUACAUAUAGAUGGAUGGAUUGACACAAUGCCAGAAGUAUCGUUUGAGCACGCAUUUUUCUUUGGUCAGAAGAUAUUAGUUCUUGCUGGUGUGAGAGGCUGAAGCUGCCAGCAUGAUCUGGUCCAUGAGUUGCACUGCUGAAUAUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGCAUUCGUUGUUCUGAGCUAUGUAUGGAUUUGAUCGGUUUGAAGGCAUCCAUGUCUUUAAUUUCAUCGAUCAGAUCAUGUUGCAGCUUCACUCUCUCACUACCAGCAAAACCAUCUCAUCGGGGCUCCAGUCUUCGAUCACAGGUUCGUAAUUGUCUUAAGCAGGUCAUCACUAUAAGCUGACAAGCUAUAUGAUGCAACCUUUUCCCGAACUUCUAUGGACUAUGGAGAAAGGAGGUCAGUGUUCUUUGUUCCUGUAACGAUUAAACUAUUAGCCAUAUACUUCUCAUUUUCUCUUGAACAUGGUUUUCUUCUUUGUGUGCACUUGAUGAUUUGAUACAGUACGAUAUAUUGCUAUCUAAUCUCACAACUGUUGAUACAUUCUCAGUUGGAACUCUGAGCAAUUUUGUCCCCCAUUUCCUCCUCGGACACAUUUACUACACUGCUAUAUAUACAUUUUCACAAAAAAACAAUGCUCCAGGGACAUUGUUAGUUCAUCUGAACUUGCUUCUGCAGUUCUACAUCUGUACUGUUAAGUGUUUCAGGCAACAUCACGACAGGAGCCAUAAAUCCUUUCAGCUACAUCUAGGGAGCGCAACUGCUGUCCUCGACACUGUGACAAUAUUCUACAGAGAAUGUGAUUUUCAGAAAAGAAAAAAAAAUGCAAAGCAUUGGCCAUUGGCCGCUUGAAAUGGUUUUUGUUUUUUAGAGAAAGCAUUGGCCAUAUGCAUGUGCUCCUACACGAUUUUAGCGACUCCAUAAUCACAAUGUGUGCUUCUCAUGUUCAUCUUCCGGAAAGCAUCCUCUUUCCCCAAAAUAAUAGCUAAUAAUAAAAUGACUCAUAUCACAUU

Sequence
(XR_003243006.1):

AUUUCGGUUAGAAAACGUAAAAUAUGUUAAAGUUUCAUUAAGUGGUUAGGUCGUCAUUAUCGUCCUAAUGAAAUUAUUGCGUACUGGAACCCAAUGUGAUUAGUCAAUAACAGCUCAUUCCCACUAUCUAUAUAUGUAGUACAUUUUUCGAUCUAUUCCAGGUACAAGAUCAACAGUUCGCACCUUGAUUGACGCUAAUUUUAGCCCAAAAUACUCCCACCAACAAAACAAAAAAAAAGAAGAAGAAGAAAUUACUACAGCAAUCAGCCUCGAGAAGCAGCAAAUUUCCCAUAGGAAUUUCACUGUAAACAUCACGUUGAAACCAACGGCGCCGAAUGCGCAAAAUUAUCAGCAGCUGGAGAUCGAUCGAUCGAACUCAUCUAAGGCGCUGUGCAAGCAAGGACAGUCCACAGAGACGGAUACGAGAGCGUACAUCACAGUACAGCUAAGCUGAAUGCAUCGAGCACGCGCUGAACGGCAGCAUCACGAGGGGUGGGUGGGCGAGAACGCGAGGGACCAUACCUAGCUGCAAGUCUUGAUGAGUCGACCUCCAUCCAUGCAUGGCGCUCGCAAGAUUUUGUCUCACUGCCCUACCGAAAUUGCCACUGAUGAUAUACAUAUAGAUGGAUGGAUUGACACAAUGCCAGAAGUAUCGUUUGAGCACGCAUUUUUCUUUGGUCAGAAGAUAUUAGUUCUUGCUGGUGUGAGAGGCUGAAGCUGCCAGCAUGAUCUGGUCCAUGAGUUGCACUGCUGAAUAUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGCAUUCGUUGUUCUGAGCUAUGUAUGGAUUUGAUCGGUUUGAAGGCAUCCAUGUCUUUAAUUUCAUCGAUCAGAUCAUGUUGCAGCUUCACUCUCUCACUACCAGCAAAACCAUCUCAUCGGGGCUCCAGUCUUCGAUCACAGGUUCGUAAUUGUCUUAAGGUCAUCACUAUAAGCUGACAAGCUAUAUGAUGCAACCUUUUCCCGAACUUCUAUGGACUAUGGAGAAAGGAGGUCAGUGUUCUUUGUUCCUGUAACGAUUAAACUAUUAGCCAUAUACUUCUCAUUUUCUCUUGAACAUGGUUUUCUUCUUUGUGUGCACUUGAUGAUUUGAUACAGUACGAUAUAUUGCUAUCUAAUCUCACAACUGUUGAUACAUUCUCAGUUGGAACUCUGAGCAAUUUUGUCCCCCAUUUCCUCCUCGGACACAUUUACUACACUGCUAUAUAUACAUUUUCACAAAAAAACAAUGCUCCAGGGACAUUGUUAGUUCAUCUGAACUUGCUUCUGCAGUUCUACAUCUGUACUGUUAAGUGUUUCAGGCAACAUCACGACAGGAGCCAUAAAUCCUUUCAGCUACAUCUAGGGAGCGCAACUGCUGUCCUCGACACUGUGACAAUAUUCUACAGAGAAUGUGAUUUUCAGAAAAGAAAAAAAAAUGCAAAGCAUUGGCCAUUGGCCGCUUGAAAUGGUUUUUGUUUUUUAGAGAAAGCAUUGGCCAUAUGCAUGUGCUCCUACACGAUUUUAGCGACUCCAUAAUCACAAUGUGUGCUUCUCAUGUUCAUCUUCCGGAAAGCAUCCUCUUUCCCCAAAAUAAUAGCUAAUAAUAAAAUGACUCAUAUCACAUU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

419

LEP:

85.16%

ME_num:

64

MEP:

13.01%

HE_num:

8

HEP:

1.63%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.96

Avg Expression:

5.02

Tip: OSA-LNC112939354 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.244944084435410.000122599751934482
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN3.687770798679532.12134305832719e-62
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.843258103451970.00288921705925909
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN3.617144922596051.28006033686875e-52
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-2.279893379932370.000370025332117857
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-7.933764697675298.72177481994304e-10
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-1.824933500390840.000576106519697743
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.245437658974811.87473187647386e-05
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.496616119915950.00433558668215139
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.402042858640476.90774114935482e-08