Chr:
Chr6
Start:
27674047
End:
27675797
Strand:
+
Ref_name:
LOC112939354
Sequence
(XR_003243004.1):
AUUUCGGUUAGAAAACGUAAAAUAUGUUAAAGUUUCAUUAAGUGGUUAGGUCGUCAUUAUCGUCCUAAUGAAAUUAUUGCGUACUGGAACCCAAUGUGAUUAGUCAAUAACAGCUCAUUCCCACUAUCUAUAUAUGUAGUACAUUUUUCGAUCUAUUCCAGGUACAAGAUCAACAGUUCGCACCUUGAUUGACGCUAAUUUUAGCCCAAAAUACUCCCACCAACAAAACAAAAAAAAAGAAGAAGAAGAAAUUACUACAGCAAUCAGCCUCGAGAAGCAGCAAAUUUCCCAUAGGAAUUUCACUGUAAACAUCACGUUGAAACCAACGGCGCCGAAUGCGCAAAAUUAUCAGCAGCUGGAGAUCGAUCGAUCGAACUCAUCUAAGGCGCUGUGCAAGCAAGGACAGUCCACAGAGACGGAUACGAGAGCGUACAUCACAGUACAGCUAAGCUGAAUGCAUCGAGCACGCGCUGAACGGCAGCAUCACGAGGGGUGGGUGGGCGAGAACGCGAGGGACCAUACCUAGCUGCAAGUCUUGAUGAGUCGACCUCCAUCCAUGCAUGGCGCUCGCAAGAUUUUGUCUCACUGCCCUACCGAAAUUGCCACUGAUGAUAUACAUAUAGAUGGAUGGAUUGACACAAUGCCAGAAGUAUCGUUUGAGCACGCAUUUUUCUUUGGUCAGAAGAUAUUAGUUCUUGCUGGUGUGAGAGGCUGAAGCUGCCAGCAUGAUCUGGUCCAUGAGUUGCACUGCUGAAUAUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGCAUUCGUUGUUCUGAGCUAUGUAUGGAUUUGAUCGGUUUGAAGGCAUCCAUGUCUUUAAUUUCAUCGAUCAGAUCAUGUUGCAGCUUCACUCUCUCACUACCAGCAAAACCAUCUCAUCGGGGCUCCAGUCUUCGAUCACAGCAGGUCAUCACUAUAAGCUGACAAGCUAUAUGAUGCAACCUUUUCCCGAACUUCUAUGGACUAUGGAGAAAGGAGGUCAGUGUUCUUUGUUCCUGUAACGAUUAAACUAUUAGCCAUAUACUUCUCAUUUUCUCUUGAACAUGGUUUUCUUCUUUGUGUGCACUUGAUGAUUUGAUACAGUACGAUAUAUUGCUAUCUAAUCUCACAACUGUUGAUACAUUCUCAGUUGGAACUCUGAGCAAUUUUGUCCCCCAUUUCCUCCUCGGACACAUUUACUACACUGCUAUAUAUACAUUUUCACAAAAAAACAAUGCUCCAGGGACAUUGUUAGUUCAUCUGAACUUGCUUCUGCAGUUCUACAUCUGUACUGUUAAGUGUUUCAGGCAACAUCACGACAGGAGCCAUAAAUCCUUUCAGCUACAUCUAGGGAGCGCAACUGCUGUCCUCGACACUGUGACAAUAUUCUACAGAGAAUGUGAUUUUCAGAAAAGAAAAAAAAAUGCAAAGCAUUGGCCAUUGGCCGCUUGAAAUGGUUUUUGUUUUUUAGAGAAAGCAUUGGCCAUAUGCAUGUGCUCCUACACGAUUUUAGCGACUCCAUAAUCACAAUGUGUGCUUCUCAUGUUCAUCUUCCGGAAAGCAUCCUCUUUCCCCAAAAUAAUAGCUAAUAAUAAAAUGACUCAUAUCACAUU
Sequence
(XR_003243005.1):
AUUUCGGUUAGAAAACGUAAAAUAUGUUAAAGUUUCAUUAAGUGGUUAGGUCGUCAUUAUCGUCCUAAUGAAAUUAUUGCGUACUGGAACCCAAUGUGAUUAGUCAAUAACAGCUCAUUCCCACUAUCUAUAUAUGUAGUACAUUUUUCGAUCUAUUCCAGGUACAAGAUCAACAGUUCGCACCUUGAUUGACGCUAAUUUUAGCCCAAAAUACUCCCACCAACAAAACAAAAAAAAAGAAGAAGAAGAAAUUACUACAGCAAUCAGCCUCGAGAAGCAGCAAAUUUCCCAUAGGAAUUUCACUGUAAACAUCACGUUGAAACCAACGGCGCCGAAUGCGCAAAAUUAUCAGCAGCUGGAGAUCGAUCGAUCGAACUCAUCUAAGGCGCUGUGCAAGCAAGGACAGUCCACAGAGACGGAUACGAGAGCGUACAUCACAGUACAGCUAAGCUGAAUGCAUCGAGCACGCGCUGAACGGCAGCAUCACGAGGGGUGGGUGGGCGAGAACGCGAGGGACCAUACCUAGCUGCAAGUCUUGAUGAGUCGACCUCCAUCCAUGCAUGGCGCUCGCAAGAUUUUGUCUCACUGCCCUACCGAAAUUGCCACUGAUGAUAUACAUAUAGAUGGAUGGAUUGACACAAUGCCAGAAGUAUCGUUUGAGCACGCAUUUUUCUUUGGUCAGAAGAUAUUAGUUCUUGCUGGUGUGAGAGGCUGAAGCUGCCAGCAUGAUCUGGUCCAUGAGUUGCACUGCUGAAUAUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGCAUUCGUUGUUCUGAGCUAUGUAUGGAUUUGAUCGGUUUGAAGGCAUCCAUGUCUUUAAUUUCAUCGAUCAGAUCAUGUUGCAGCUUCACUCUCUCACUACCAGCAAAACCAUCUCAUCGGGGCUCCAGUCUUCGAUCACAGGUUCGUAAUUGUCUUAAGCAGGUCAUCACUAUAAGCUGACAAGCUAUAUGAUGCAACCUUUUCCCGAACUUCUAUGGACUAUGGAGAAAGGAGGUCAGUGUUCUUUGUUCCUGUAACGAUUAAACUAUUAGCCAUAUACUUCUCAUUUUCUCUUGAACAUGGUUUUCUUCUUUGUGUGCACUUGAUGAUUUGAUACAGUACGAUAUAUUGCUAUCUAAUCUCACAACUGUUGAUACAUUCUCAGUUGGAACUCUGAGCAAUUUUGUCCCCCAUUUCCUCCUCGGACACAUUUACUACACUGCUAUAUAUACAUUUUCACAAAAAAACAAUGCUCCAGGGACAUUGUUAGUUCAUCUGAACUUGCUUCUGCAGUUCUACAUCUGUACUGUUAAGUGUUUCAGGCAACAUCACGACAGGAGCCAUAAAUCCUUUCAGCUACAUCUAGGGAGCGCAACUGCUGUCCUCGACACUGUGACAAUAUUCUACAGAGAAUGUGAUUUUCAGAAAAGAAAAAAAAAUGCAAAGCAUUGGCCAUUGGCCGCUUGAAAUGGUUUUUGUUUUUUAGAGAAAGCAUUGGCCAUAUGCAUGUGCUCCUACACGAUUUUAGCGACUCCAUAAUCACAAUGUGUGCUUCUCAUGUUCAUCUUCCGGAAAGCAUCCUCUUUCCCCAAAAUAAUAGCUAAUAAUAAAAUGACUCAUAUCACAUU
Sequence
(XR_003243006.1):
AUUUCGGUUAGAAAACGUAAAAUAUGUUAAAGUUUCAUUAAGUGGUUAGGUCGUCAUUAUCGUCCUAAUGAAAUUAUUGCGUACUGGAACCCAAUGUGAUUAGUCAAUAACAGCUCAUUCCCACUAUCUAUAUAUGUAGUACAUUUUUCGAUCUAUUCCAGGUACAAGAUCAACAGUUCGCACCUUGAUUGACGCUAAUUUUAGCCCAAAAUACUCCCACCAACAAAACAAAAAAAAAGAAGAAGAAGAAAUUACUACAGCAAUCAGCCUCGAGAAGCAGCAAAUUUCCCAUAGGAAUUUCACUGUAAACAUCACGUUGAAACCAACGGCGCCGAAUGCGCAAAAUUAUCAGCAGCUGGAGAUCGAUCGAUCGAACUCAUCUAAGGCGCUGUGCAAGCAAGGACAGUCCACAGAGACGGAUACGAGAGCGUACAUCACAGUACAGCUAAGCUGAAUGCAUCGAGCACGCGCUGAACGGCAGCAUCACGAGGGGUGGGUGGGCGAGAACGCGAGGGACCAUACCUAGCUGCAAGUCUUGAUGAGUCGACCUCCAUCCAUGCAUGGCGCUCGCAAGAUUUUGUCUCACUGCCCUACCGAAAUUGCCACUGAUGAUAUACAUAUAGAUGGAUGGAUUGACACAAUGCCAGAAGUAUCGUUUGAGCACGCAUUUUUCUUUGGUCAGAAGAUAUUAGUUCUUGCUGGUGUGAGAGGCUGAAGCUGCCAGCAUGAUCUGGUCCAUGAGUUGCACUGCUGAAUAUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGCAUUCGUUGUUCUGAGCUAUGUAUGGAUUUGAUCGGUUUGAAGGCAUCCAUGUCUUUAAUUUCAUCGAUCAGAUCAUGUUGCAGCUUCACUCUCUCACUACCAGCAAAACCAUCUCAUCGGGGCUCCAGUCUUCGAUCACAGGUUCGUAAUUGUCUUAAGGUCAUCACUAUAAGCUGACAAGCUAUAUGAUGCAACCUUUUCCCGAACUUCUAUGGACUAUGGAGAAAGGAGGUCAGUGUUCUUUGUUCCUGUAACGAUUAAACUAUUAGCCAUAUACUUCUCAUUUUCUCUUGAACAUGGUUUUCUUCUUUGUGUGCACUUGAUGAUUUGAUACAGUACGAUAUAUUGCUAUCUAAUCUCACAACUGUUGAUACAUUCUCAGUUGGAACUCUGAGCAAUUUUGUCCCCCAUUUCCUCCUCGGACACAUUUACUACACUGCUAUAUAUACAUUUUCACAAAAAAACAAUGCUCCAGGGACAUUGUUAGUUCAUCUGAACUUGCUUCUGCAGUUCUACAUCUGUACUGUUAAGUGUUUCAGGCAACAUCACGACAGGAGCCAUAAAUCCUUUCAGCUACAUCUAGGGAGCGCAACUGCUGUCCUCGACACUGUGACAAUAUUCUACAGAGAAUGUGAUUUUCAGAAAAGAAAAAAAAAUGCAAAGCAUUGGCCAUUGGCCGCUUGAAAUGGUUUUUGUUUUUUAGAGAAAGCAUUGGCCAUAUGCAUGUGCUCCUACACGAUUUUAGCGACUCCAUAAUCACAAUGUGUGCUUCUCAUGUUCAUCUUCCGGAAAGCAUCCUCUUUCCCCAAAAUAAUAGCUAAUAAUAAAAUGACUCAUAUCACAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.16%
ME_num:
MEP:
13.01%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.96
Avg Expression:
5.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.24494408443541 | 0.000122599751934482 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.68777079867953 | 2.12134305832719e-62 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.84325810345197 | 0.00288921705925909 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.61714492259605 | 1.28006033686875e-52 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.27989337993237 | 0.000370025332117857 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -7.93376469767529 | 8.72177481994304e-10 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.82493350039084 | 0.000576106519697743 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.24543765897481 | 1.87473187647386e-05 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.49661611991595 | 0.00433558668215139 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.40204285864047 | 6.90774114935482e-08 |