Chr:
Chr6
Start:
14598090
End:
14599307
Strand:
-
Ref_name:
LOC112939337
Sequence
(XR_003242955.1):
CUCUCCCCUUUUAUGACUCGUACAGGUAAAAGCAUCAGCUAGCUAAUCCCCUUCUUCCUUCCUGCAUUUGCUGCUAGCAGUGGCUAUCUUCUCCCUCAAAUCCCCACUCUAGUACUGUUGCUGCUGCCACCAUGUUGCUCUCGGCGCCCUCAAUGCCCAGGCUACCAACAAGACCUGCCCUCCUAAUCCUCCUCCUUGAGCUCUCCAACCCACAGCUCAAAGAAGUGGACUCCCAUGGCUAGAAUGGAGUCACGCAUGGAACUCUAAGCCCAGAUGCCCUGACCAGUGCCCCAUAGUGCUCGACAUCACCGUGCAACCAUCCCCUAGGUCCAGUUCUUCCCCAAACCGGCAGUCCUCCUUCCUACCGAGCUGAUGGUGGUGCUCUACGUCACCAUUUUCAGGUUGAUUGGCUACAAAUCUUGGGAAUGGUUGGCAAUUGAGGUGAAGGUGGAGAGGGGUUGUGUUGCUCGAUGUGUUCACUGGUUGAAGGUGAUUGUUGUGCCCAUAUCUAUCUCACCUACUUCCACCUUCUCUUACUUAUUACCAGGAGGUGUUAGGAAUGCUGCCCAUACUUCUCCCUGUUGAUUUUCACUAUUAUUAUGGGUAUGUGUCACAAGCUCACUAGGUGAGAGUUUUUAUUUACUCUUUGCACUGUGGUCACCUUGACCACCCUUGACUGGAUAAAGAAAAUAUGGCUUCUUUUAUGGUGGUACCAAUUGUGGCCGCAAGGGUGAAAGACGAGUUAGUGGCUCAUUCGUUAGUUGAAUGAUGAUAAUCAAGACUAGCUUAAAGUGUUGAUCUAUCCUUGAUGGCAUUGAUACCUCUCUGAGUUAGCAGAUGAAAGUUGCAGUUUAUGGGUGUGACAGCUAAUUUGCAGCUAGUAUGAACCUCUUAUAUGCUUAUGUAUUCAGACCAUCUACAUUUCUAAUUAUUUAAUCGAAUGCACUUCUAGACAUGUAUUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.67%
ME_num:
MEP:
56.1%
HE_num:
HEP:
14.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.92
Avg Expression:
20.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.54009473078388 | 0.00771142269119329 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.45364056941798 | 1.90407507054856e-08 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.23801650506183 | 7.15918169561078e-09 |