Chr:
Chr6
Start:
17280095
End:
17282276
Strand:
-
Ref_name:
LOC112939336
Sequence
(XR_003242950.1):
AACUGGCACGCUCACGAACCUAAAGGCAAGAUUUUUGAUCCUGCACUGAAGUUAAGCAAAUCUUUCAGGCCUCGUGUUUUCGCAUCAACACACAUAUAUGUACGUAAUAUUUGUGUCCAAUAAAUCCUAAUGACUAGUUUUGCAUCGUUUAAGAGUAGGAAGCUCUUAAAAUUGAUUUUCGUUCUAUCAGUCACAUGUUCUUAUAAACCAGUCUGAAGCUGACUUAUGUACCUUGCCCAAGCGAAACUGCUCGAUGGAUCGAUGUUAUCCUCUGAAUUGGGUAGUACAUGCAUGUAAAUUAAUCAACCACAUGAACAUCCCAUCACAACGAAAGAUGGAUCGAUGCUACUGCAUGCUGAAAGCGUCGAUAAGAGUUAUCAUAACAAUAAUAAGGUUUCGUCAAUGCCGUAUCCCAGAAGAUGCAGUGUGGAAUUAAUGCUGCUCUAUAUAUAUACGUUUAUCUUUAAUUAUGUUUGUCAAUAGUGUGGCGCCAAUGGAUUGUGGAUCGAUUAGUGAGAUGUUCUGAGGUCAUUUACAAAUGAGAUUAGCACAGAUGGCUUCCACCUAAUGUCUGAGCGAUGCUGCAUAUAUAUAAAACUAUGAGAGUACUAAUCAUGAUUAAUCACUAAGGGCGUUAUAUUAUAUUUAGCCAGCAUGUAUAUAUUGAUCAAUAAUUAUUGUCUCAUCAUGCAUGAAAAGUACACAUGAUUGCUCUAUGUCUGACAUUUAUUUUAUUAUAGUUCCUUUUUUUAAUAAAGUCGCAUCUUGCAUAGUCACAUUGCAGAACCAGCCGGCCGUAUGAAACUUUGAUGCAUGCCUGCAUCAAUACCUUAUAUCAAUCAAAUUAAAUUAGCACAUGCAAAGGAAAGUUGGUAAAGAAAUACAACACCAUGCCAGUUGCACGAAAAUAAUCAAAAAAAAACUCCAAUUAAUAUACCUUUUAUAUCAUACUGAUUUACUAUCAUGAUCUUGAAUGCUGAAUUAGAAAUCAGUUGCAACUAAGCUGCCAGUAUAUUUACCUAAUUAUAAGUUUACUGAAAGAUAAUGAAUGACUCUAAAAUAUAUACAAACUGAUGCUUCAUUUCGAUUUCAGACAAAGAAUUAGUCAGCGAAACAAACUUGAAGUUUAUCCCAAGUUGCAACAUUUUAUCAUUUCUUGGUCAAAUCCAUGAUGCAAGCUUAGUAGGACAAAGAAAAAAUCGCUACUUUAAUGGUUGAUUCCAAUCUUGACACUAUACUCCAAGUAUCUUUCGCUCUAGGUUUGCCAAAGAGCACAGGAACGUGGUCCUAGUGUGUGUAUUUUACUAUUUUAGCAAUAAAGUCAUGGUUGCUUCAGUAGAAAGACCAAAGAUGUUUGGAACUUUGGGUGUAUAUAUAGUUCGUUGCCAUAAUUCUGUGGUAAUAAGUAAAAAUACAGAGCACACCGUAGGUGAGUUCAAUUUCUUCAUUGACUUUAUUUGAAUGUAGUCAUUUCGAAUUCUGCACCAUUUCUGUUUUAAUAAGAGGAUCGAAGCAUCUCAAAUUCUCCGCGGUUUCUACAGGGUUGCCACAGUUCACAUUGAGAUCAUAGCUCAAAACAACGCCAGGUCGAAAGAUAGCAGAGGAUGAAAAAUCAAUCAGUGCCAACGUUCCCUGUAGAAUGUGCAGCUGGAGAUAACACGAUCACGCAUCAAAAGACAAAUUCCGGCCAUACGCCGCAGGUUUUACAGUCUGUCUGUCCUGCCAUCAUCAUGUAUGCAUGGCCUGCAAAAGACGCAAAGGAAAAAAAAGGAAGAGCAAAUCAGAGGAAUACAGACAGAAUAAAAGCCUUAUAGCCUCUCAAUGUAGCAGCAGCAUGCAUAUUAGCCUAUAGGCAGGGCAUAAACAUGCCUGAUCCAAGGAAAGCAGCAGAGCAGACAUCAAGCAAAAGGCAAACUGUUGGCAGAUUUUGGCUCAACAGAAUUUGCCAUGUAAGUAGCAUGCAUGCUUGCUUUGUGCCUUUCAUAUUGACAGCCUGCAUUUUGUGCCAAAGGUAAAGGAGAUGUAGAGAGCAGUCACCAUCUUCCUAUCUGUCUCUCUAGACUCGAGUCACCACCUUUACUUUUGUAGCUUUUUUUGAAAAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.89%
ME_num:
MEP:
6.91%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.97
Avg Expression:
0.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.36330178437854 | 0.00211120301423317 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.51126910072018 | 2.3412861942594e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.29228169117734 | 6.81904472694758e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.44245031258608 | 3.53712370878337e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.60680273160488 | 8.10928121085067e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.84657222425432 | 1.95303273259951e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.64959295226384 | 0.000612444724221572 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.35462385400157 | 8.06838873852769e-10 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.19876958079768 | 0.00691305708060966 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.53770833581281 | 9.2847262502532e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.94370044090842 | 4.15270257841045e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.970208194775 | 4.37958679277795e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.67902678334503 | 6.22170399206785e-14 |