Chr:
Chr6
Start:
24365590
End:
24366066
Strand:
+
Ref_name:
LOC112939329
Sequence
(XR_003242937.1):
GCCAUCCACGCCAUUCGCCGGUCGAGCAACCGUCAGCGCCGCCGCCUGCGGUUCCUGCGGCAUUGCGCAGGUCUCGAAGCUCUUGACGGAGACCGUCCCAUCAUCGUCGUCGUCGUUCUCGUCCUCGGCGGCCGCGCUGAUCUCGUCGCCGCAGAGAUUGUUUAUGUCGCAGGCAGGCAAAAGCAUCUGCAAUUGUGAAGAUCCAUGAACCGAGGUGCCACGACAAAGUACAGAAUCGAAAGUACAUUGGCCUCAUCGCCGGUUACUGAUUGGUGUACCGAGAGAUCUUCACUUUUUCUCGUACUGAACCUGAACCCGAACCCAACACCGACUGCACAGUUGCACUGCACCACCACAAACGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
55.08%
ME_num:
MEP:
39.23%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.82
Avg Expression:
6.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.33094702225458 | 0.00469292742456102 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.26280389893453 | 8.43635710405815e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.653263119234 | 0.00199359844645057 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.39150884622316 | 0.0371133857553987 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.40570911352292 | 0.00294959149623195 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.0878818911449 | 0.00874041495027067 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.63435779171248 | 0.000596009402247893 |