Chr:
Chr1
Start:
19375559
End:
19378722
Strand:
+
Ref_name:
LOC112939323
Sequence
(XR_003242924.1):
CCCUCCUCUCCCUCCCCUUGCAGAUCCGGCUACACGCCGCCCCUCCUCUCCCUCCCCUUGCAGAUUCGGCGAAGAGGAGGCAUGGGGGCCCGACGGAUCUGGCAGAGCGGCGAGAGGCGGCGUGCGGCGGCGGGAGGGAGGCGGCAUGCGCCCCUCGGCGGUGAGAGGUGGUUGGACAAAGGCGGCCUGCGCCCCUUGGCGGCGGGAGGUAGUGGGAUAGAGGCGGCCCUUGGUUCCCCUUUCCACUUGGUUUCUUUUUUGUCACUGCAUUAUUUUUCUUUUUUUUAAGUAGGGGCAAUUGUGUUCAUAUAGUUUAAUUAUUAUUUUACACCUGUUUUUUAGGGUUUGUGAUUUUGCCCCUGCUUUUUUUAAAUGAAGCAGCCGUCUACCUCUGGUUUUGACGGUAGUUUAGUGGGUUCGAAAUUUCCGAAUUAAACGAAUAAAAAAAUGAUAUUAUAAUUUGUGAAUGACAUCCUACCCUUGUUUCACUAAAACAGUCAACCACUUGCUGGAAGUGUAAUUUCCCCAAUCCAAAACCCUAGAGCGGCGGCGGCGACGCGCGAGCACAGAGAAGGGGAGGAGCGGCCCGCGCGCGGCAGGGAGACGCAGCGACCCGGUGGGCCAACUGCCGCGGGGCCAGCGCGGCGCGCGGCGCGGCGGAGAGGAGCGGCGGCCUCGCGCGCGCGCAGGUAGGCGUGGUGCGGCGGACCCGCGGGCGCGCGUGCAGGGAGGCGUGGCGGCCCCGCGGCCAGCGCGCAGGGAGGCGCGGCGCAGCGGCCAUGCGGCCAGCGCGCGCGGAGAGGAGCGGUGGCUCCGUCGGCUCCUCUCUGUUUUAUGCAGUUAAAAUAAUAUCAAAUAUAUCACUGCAGUGGAAGGAGCAGUGACCUCCGUGGGCUAGAGACCAUCCCCUCUCACAUCCGUUGACUAAGCCCGUCUCUACUCAAUGCCUAGACAUCGCAGCUCGCCGCCGCCACCAAGAGAGGGCGAGGGAGGCGCAUCAGCACGUGAGGAGCUGAUGAAGAUGAUGCCGACGGCUGGUUCUCCCAUCUUCACUGCGUGCAGGAUGGGGGAGCACACGAUGAGGUCGAGGGUGGGAAGUCCGCCAUCAGAAUCCACCGCCGACGCCAUCGUACCUCCAGCUAGCGCCGCACGUCCAGAUCCGGCACAGACUGCCGCCGAGAGGCGCGGACCACCAUCGUCCCACGGCCGCACGCCGCCUCCCGCCCCUCAAACUGCCUCCGUACCGCCGCCGCACGCCGCCUACCGCCAGAUCCGACGCGGACUGCCGCCGUCCCACCGCCGCACCUCCAGAUCCGGCGCGGGCCGCCUCCCUCCCACCACCGGCCGCCACCGGGUCGCUGCCUCCCCUCCCGCCAGAUUUGGUGGAGGGGAGGGCCCUGCCAUGUUGCAGCUGUGGUGGAUGAAUGGAGGAGGAGGAGAAGGAAAUGUGGAGAGGAUGAGAGAAGGAAGGAGAGAAGGAAGAAGAAGAGAGAGGGGAGGGGCGGUGGAGACAGGAUGGAGAGGGAGAGAGAGAAGUGGAUAAGGAUGGGGCGAGAGAGGAGUGGCUCGUCUUAGGAUGGGUGUCGGUUUUAACUGAAAAGUGGCAUCUAUUUCUUUUGCCUACAAAGAUGCUGGUUAUAGGGUAGGUCCCGUAGUUGGGAUAGGGACUAAAAUGCCGGUUUUAGUUUAGAACCGACAUCUAUAUCUAACAGGGGUAAUAGGUAUCGGUUUUGUUUAAAAACCGGCACCUUUUAAGUGAUAAAGGUGACGGUUCUUGUGGUUUGGACGGGCUGAGGGGCAAGGGGCCCCGCGGGCCAGGGGGAGGCACUGUAGGUGGUGAUUUUACCACUUCCACGACCUAUAGAGCUGACUUAUAUUAACUAUUCUGCAGUAGUUAACAAGUAUUAUUAACUUUAGAGGAGUAGGGUAUAUAAAUGUUAUGUCUGAGUAUUUAAGCACGCGGCAGGAAUCCAUGCCGUCGCCGUGGGCCGUGCUUCUCCUGGACCUGAAAUGGCCAGCUGGUGCGGGAUUCUAUUCUCAGAUGAACGUCGUGGAGCUGUGAUGGUGGUGGGACGUUACGCGGUCGGGAUCGGAUCGAUCGGCGCUCAGCCCCACCGGACGACGGCGACGGCGCGCGGCCUCCGAGUCUUGGACGCACGCAGGGGGACGGCGACCCGUUUGUCCGCGCCCGCGUGCAUGUACUUGCAGUGAUUUUUCCUCGUUUCUUUCCUUCGAUUACCGUGAAAGUUUCGUACUUCCUCUAUUUCAUAAUAUAAGUCAUUUUAACAAUUUUGACAUAUAUACUGAUGUUAAUAAAUCUAGACAAUGUAAGUCCAUCUAACAUUUUUCAUAUUUAUAUUGAUGUUAAUAAAUCUGGACUGUAUAUUGAUGUUAAUAAAUCUAGACAGUCUAGAUUCAUUAACAUCAAUAUAAAUGUGAAAAAUGCUAGAAUGACUUACAUUAUGAAACGGAGAGAGUACAAUACUUACUAUGUUCUAAUAUAAAUAACGUCUUUGAUUUUUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.32%
ME_num:
MEP:
67.48%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.64
Avg Expression:
1.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.6836524124267 | 0.00276557554277857 |
2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.2369173917611 | 0.00462513728313486 |