Chr:
Chr6
Start:
15696854
End:
15698384
Strand:
+
Ref_name:
LOC112939303
Sequence
(XR_003242905.1):
UCCUUCUUUCUCGAAGAAGUCUAUUACUUAUCCCUCUCUUCUUUUCUUUUCAGACCAGUGAAAAGUCUACUUUUCCUCCCUGUCGCUGUUGUUCAUCUUCAACCUCAGGACAGCCGAACUGAGACCGAGUUGGCUCGGUUUUUCUCCUCCGAAUCCGGCCUUAUCUCUCGUGUAUUCCGAAAAUUAGUUGAGGGGAUUUGUUUCCCUUAUCCUCCUCUAUCUCUUCCCCCAAAAAUCCAGUUUUAUCCCUUUGAAUUCGACGCGAAUUUGGAUUCGUUUGCGAGUUUAUCUCUCCACCAAACCCUAGGUUUUCCCGGCGCGAUUCCUUGCGUUCCAAGCCCGAUCUCUCUCUCCCAUGGCUAUAAAUAGAGUCCCCUCCCUCUCCUCUUUCGUUUGCCACCCUCGCCCGAGCUCGCCGUCGGCCGUAGCGCCCUAGCCGCGUCUGCUCUAGCGCCGCCGUCGCCGCCGAGUUUCCAGCCGCGCCACGCCGCCUUUGCAGCCGCCUUCUCCAGUCGCUGUCGCCACCAUCAGGUUCACGAGGAGGAGCCGCACACCGUCCACCACUCGGCCGAAGCCGAAGCCCGCUGGAGCGCCGCCGACGCCGUCAAGCCGAGCUCACCACCGCCUCGAUCUCGUUGCCGGCCGUUUUUCAUUGUCGUCCUUCGUCGUGCCGCCCCUCACCGCGCCACGCCGCCUUUGCAGCCGCCUUCUCCAGUCGCUGUCGCCACCAUCGGGUUCACGAGGAGGAGCCGCACACCGUCCACCACUCGGCCGAAGCCGAAGCCCGCUGGAGCGCCGCCGACGCCGUCAAGCCGAGCUCACCACCGCCUCGAUCUCGUUGCCGGCCGUUUUUCAUCGUCGUCCUUCGUCGUGCCGCCCCUCACUUGUCGUUUUCGUCGUUGCGAAGGUUCGCGAGUGCGUCGGAAGAGAUUCAGAAGACUAAUUGAAGACCGAUUAUUGCAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.91%
ME_num:
MEP:
61.38%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.71
Avg Expression:
4.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.78376034972463 | 0.000533539402747792 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.10756671112326 | 0.0175585113513134 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.6645440595588 | 0.000201312234683331 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.02650707610337 | 0.0167219947637351 |