Chr:
Chr6
Start:
12268372
End:
12269864
Strand:
+
Ref_name:
LOC112939302
Sequence
(XR_003242901.1):
UUCUUUUGCUAUUAAGUCCGACCAUCUCGUUAUUGUCCCAUACAUUCUUCACAUCAAUAUAUAUUCUUUCUUUAUUUCUUCAGUGCUACUUGAGUUGUUUCCAGUGUGUUGUCAUACCUUUUUCCGCUGCAAUGCAUAUUUCUUGUUUGGUUGGUGUCUUAUGUUUUGUUGUGUUUGAUAGGUGUACGUGAGAAAUGCGAUGGCGGGAUACUGGGGUAAUGUGAGUGUGCGACCCGGACAGUGAAGGGGACGGACCGUAGGUGCGGUAUGAGACGAUGCUGGCGUACCGGGUGCAGUCACAGGGGUGACGAUCGAGGAACCAGCCGCCCGGACAUCAUCAUGGUUUCCUUCUACGUACGUACUCGAUAUGGGGUUCGUCCACCCACACCAUACUGCCCAUGCCUGCCUUCUACGCUAUAUUGCAGGUAGCUUUGCCGAGCAUGAGCGGAUGUGUGCUAUGCUGCCAUAGCACCAACGAGGUUCCUACGACCACAUUUGAGGAUUUAAAUGAAGCACAUUCUGUAAGGCUCGGAAAUCAAUAGAAGAAUAGAGGGUGUGUUUAGUUCACAUCAAAAUUAAAAGUUUGGUUGAAAUUGGAACGAUGUGAUAGAAAAGUUGGAAGUUUAUGUGUGUAGAAAAGCUUUGAUUUGAUGGAAAAGUUAAAAGUUUGAAGAAAAAGUUUGGAACUAAAUAAGGCCAGAACAAGUAGUAGGUGCGUGAGUCGGGUCACAUGCGAGGAGGAGCAGGGACGUGAAGCGUGAGUGGCAGGAAAAGAUGGCGCUGGUGUUGAGGUCUCCAACGGUAUUACUCGAACGAGCAGUUGGGGCCCUGGGAGCUGCGGGGUAAUUGCCGCGAAAAUGGUGCUUUUCCUUGUGUUAUUGCCGUGGGGUUAUUGGAUUUGGAUUUUGGAGUUAGUCUUUAGUAUUUUCAAAUUUCCUAAUUGUAUCUAAUUAUCUCAAUGGUUGGGAUUGUUUUCUCUGCAGAAGGACAAAAUAGUGUGCUAGCGUCAUAGUUGAGCACUAAACCUUAACUUCACACUGAUACUUUUUGCUCAAUUGUUGUAUAUCAUUUUAUACAAAUGUUUAGGAUAUAUAUUUGGCAUUUAGUAGUGAACUUUGCGAGUUAAGCGAAUUUUGCUA
Sequence
(XR_003242902.1):
UUCUUUUGCUAUUAAGUCCGACCAUCUCGUUAUUGUCCCAUACAUUCUUCACAUCAAUAUAUAUUCUUUCUUUAUUUCUUCAGUGCUACUUGAGUUGUUUCCAGUGUGUUGUCAUACCUUUUUCCGCUGCAAUGCAUAUUUCUUGUUUGGUUGGUGUCUUAUGUUUUGUUGUGUUUGAUAGGUGUACGUGAGAAAUGCGAUGGCGGGAUACUGGGGUAAUGUGAGUGUGCGACCCGGACAGUGAAGGGGACGGACCGUAGGUGCGGUAUGAGACGAUGCUGGCGUACCGGGUGCAGUCACAGGGGUGACGAUCGAGGAACCAGCCGCCCGGACAUCAUCAUGGUUUCCUUCUACGUACGUACUCGAUAUGGGGUUCGUCCACCCACACCAUACUGCCCAUGCCUGCCUUCUACGGUAGCUUUGCCGAGCAUGAGCGGAUGUGUGCUAUGCUGCCAUAGCACCAACGAGGUUCCUACGACCACAUUUGAGGAUUUAAAUGAAGCACAUUCUGUAAGGCUCGGAAAUCAAUAGAAGAAUAGAGGGUGUGUUUAGUUCACAUCAAAAUUAAAAGUUUGGUUGAAAUUGGAACGAUGUGAUAGAAAAGUUGGAAGUUUAUGUGUGUAGAAAAGCUUUGAUUUGAUGGAAAAGUUAAAAGUUUGAAGAAAAAGUUUGGAACUAAAUAAGGCCAGAACAAGUAGUAGGUGCGUGAGUCGGGUCACAUGCGAGGAGGAGCAGGGACGUGAAGCGUGAGUGGCAGGAAAAGAUGGCGCUGGUGUUGAGGUCUCCAACGGUAUUACUCGAACGAGCAGUUGGGGCCCUGGGAGCUGCGGGGUAAUUGCCGCGAAAAUGGUGCUUUUCCUUGUGUUAUUGCCGUGGGGUUAUUGGAUUUGGAUUUUGGAGUUAGUCUUUAGUAUUUUCAAAUUUCCUAAUUGUAUCUAAUUAUCUCAAUGGUUGGGAUUGUUUUCUCUGCAGAAGGACAAAAUAGUGUGCUAGCGUCAUAGUUGAGCACUAAACCUUAACUUCACACUGAUACUUUUUGCUCAAUUGUUGUAUAUCAUUUUAUACAAAUGUUUAGGAUAUAUAUUUGGCAUUUAGUAGUGAACUUUGCGAGUUAAGCGAAUUUUGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.65%
ME_num:
MEP:
8.13%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.92
Avg Expression:
1.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -5.71133592668769 | 0.00735145004141283 |
| 2 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -6.3195334811906 | 0.00015000333507401 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.36077526922727 | 0.0292532166706859 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.36069025739179 | 0.0294922588870405 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.36058917138458 | 0.0293224871155665 |
| 6 | 9L136 // leaf // control--/--9L136 // leaf // salt | 4.40781516640936 | 0.0134206352876791 |