Chr:
Chr6
Start:
29344598
End:
29346360
Strand:
+
Ref_name:
LOC112939277
Sequence
(XR_003242869.1):
CAAUCCAUAGGAAUUUCAUAGGAUUCCAUAAGAUCCAUUCCUUUGAUUCAAAGGGCUAUAUAGGAAAAAUUCCUAUAGGAAAGAAAUCCUCUAAAAUUCCUAUGAAUUUCCUUUGAAUCAAAGGGUGCCUUAUAGUGUUAGAAUAUGUUAUAUUCAAUUCUAAAUUCGUUUUUCGGACCGAGGAAGUAUAUUUUAGGAUGAAAUGCUUAUAUUUUAGGACUGAGUGAGGGGGUAAUUAAUUAUCUAAGGCUGUGUUUAGUACAGCGCAAAGUUUGAAUUUUGGUUGAAAUUGGAGAUGAUGUGACUGAAAAGUUGUGUGUAAACACAGCCUAAUUAAAUUGGUGUAAUUAGGAGGGUCAAAAUGUGGUUGGUUGCGAAAGGGAUGGGAAAGACAGGGUUGUGAAAAGUGAGGCGAGAGAGGAUAAGCUUUGGAGAGGAGAUAGAUGGAGAGAUAAUGAGUGAGAUCGAAACCAGGGUCACGUCGUUGGACCAGCGCAGCAGCAGUACAUGAUCUUAUCCGUUUCGUUCACUGUCGGUUUAGCUCAAGCUGCAGCCGCUGAGUCAUCAGAUUAUUUAUUAGUAAUUAUUAAGCGAGCGAUUGAUUUGAUUUAAUUGGAGGUGUUAGUACGGGUUGGAACGCUGCUAAUUGUCUCGGUAUUCUGUCUUGGUUCGCGAGAGCGAUCGGUAAGUCUCAGUCGGCACGGGUUGUGGUGAGGACGUUUUUCUCUUCCUUUUCUUUCGCCCUUCAGGCACAGGCAGGAGUGCGACCUGCUUGGCACAGCAGAAACGGCAACUUGUGAAGAAAUGAUUGGUGCCAGAAGAGUAGACGACGAACAGUGAAAUUAUCAAGCAACACAACAUAAAUUGGACGUUGUCUAACGGCUGAUAAUCUGAGCAAACGCGCUAUGCAUGAUCAGCAACGAAGACUCUGGGCAUCUCUUUAUUUCCUGCCCUUGCACUUCCAGUCUAGAGGAUGAUCAAGGGAUGGACAUGAAUCGGCUUCCAACUGUGGGCAGAAGCGCGAAUGGAAUUGGGAGAAUGGUGGCUCACGGCGCGGCAAGGGUUUCAGACCAGCUUACAGGGAUGCAUGCUUUCUACACUCUUGUGCUGCUUGUCUAUUGGAUGGUUUGGAAGAAGAGAAAUAUACGUGUUUUCCAAAGUCAGAGUCAAGCAGCGGGCAUCCUCUUUACCUUGAUUAAAGAGGAGGUCGUGGUCUGGAAAGAAUAUGGGGUUUCCAAAUAUUUAGGAGAGUAGCGCCUUGUUGUAUCUUGUUUUCAUUUUAGGAAGUUGCUCAUAUGGCAACAUCCAUUCACUUCAUCAUCUUAUUGUCGAAGUUUGAACUCUGUAAAUGUGUACAUACCCCUUUUUUAAGUAAAUUUGGUCUGUUUGUCUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.37%
ME_num:
MEP:
47.36%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.83
Avg Expression:
2.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.50023734474666 | 6.81159608774353e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.46790241623599 | 1.56689212021994e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.48171029536451 | 1.03322728621489e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.46222875733466 | 0.0181415610075833 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.32801753491485 | 7.4669868494418e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.68116716968849 | 2.70278509030816e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.39265741013941 | 0.0128555275231124 |
| 8 | Azucena // root // control--/--Azucena // root // Al | -1.17786814885349 | 0.0234681653340701 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.94476132568843 | 0.00034445435871945 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -7.0779692115981 | 7.09724351366456e-08 |
| 11 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.58004568851655 | 0.0258747460294495 |
| 12 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -5.673224416611 | 7.62160196620676e-14 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.69987883920437 | 0.00408421968719954 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 2.44592868553535 | 0.0116609473084789 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.30526708468804 | 0.000245788022985478 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.59675942933348 | 6.10177118095915e-06 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.89580687192947 | 2.37223901358569e-06 |
| 18 | 9311 // leaf // control--/--9311 // leaf // salt | 1.54693023850628 | 0.00128155582983758 |
| 19 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.37874160724958 | 0.0386834948554722 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.78412998748482 | 1.86031560410935e-07 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.04597706113762 | 7.72117186291164e-10 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.35782998093711 | 0.0129588765287458 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.64046067264202 | 3.3520066454939e-09 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.32759225947227 | 0.000169821879036959 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.15683958192193 | 0.000451387000042105 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.97081276999635 | 9.83854530498253e-06 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.40928595971972 | 4.86055011560074e-05 |
| 28 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.01583392271056 | 0.0228603070315659 |
| 29 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.11283249408044 | 4.50307004844899e-28 |
| 30 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 4.17559460642688 | 0.00036807438774308 |
| 31 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.81760926477597 | 1.51902922729201e-07 |
| 32 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.49924554795472 | 9.00096206518017e-10 |