Chr:
Chr6
Start:
1373850
End:
1374782
Strand:
+
Ref_name:
LOC112939268
Sequence
(XR_003242843.1):
GAGGUGAGCAUCUGGAAUAGGUAGCCUGGGAAGAUGUAGUAUGCAAAGCUGCAGACGAAUGCCACCAGGAAGAACUGGUUCCGCGUCAAGCCACCUUUUCUCCGUGCUUCCUUCUCAUGAAGUGCGCUAGUAUAAGAAAUAUUUCGGUGCAGCACUGCAGCGGUUCCAACUUCCAAGUGGAACAUAUGUGGUGGUUCAGACUCUUGCAUUGCCGGUGUGGAGGUUUGAGUGGAUCAAAAUUUUGCAAGAAUUCAACUCUGGUUGGAUGGCCACCACAUAGACGCCGGCUCAACAAGAUAACGCCGGAAUAUUCCCGCCCAGCCGAACCCCAGCAUCUGAUGGCAGAAGCUAGUUUGCAUGCACCUGUGUUGUGAGGACGACAAGGAGGGAGAUGAAGAAGGAGAGGGUUUUCCCGUAGAAGACACGGACGCCGGUGAUGACGUGGAUGGCAUAGACGGUGCCGGCGCCGGAGUUGGCGAAGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.8%
ME_num:
MEP:
71.75%
HE_num:
HEP:
15.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.75
Avg Expression:
5.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.19129119942792 | 3.97411719168127e-06 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.07897694084658 | 0.000640578028803419 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.12361805920111 | 0.0122764725731011 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.72786245707242 | 0.0154526820636551 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.24705383006101 | 0.0024047565511303 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.64255135434915 | 0.00118954845271355 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.64267793484397 | 0.00122494996762192 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.64274628525339 | 0.00119459097987389 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.65575643989118 | 1.37502819273802e-08 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.59030183734583 | 0.00184152569016554 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.35492835601115 | 2.29995079633781e-12 |