Chr:
Chr6
Start:
26942144
End:
26944649
Strand:
+
Ref_name:
LOC112939258
Sequence
(XR_003242825.1):
CCGACCUUCUCUCGUGUUUUUUUUUCGUGUUCCCCUCCUUAUCUCCGACUCCCCACCCCCCCCCCCCCCCGGGCGGCGGCGGAGCUCCGGCGAGCCGAGGGAUCCGGGAAAUUCGUCGAUCCGGCACCGUGCCGGGGAGGUUAGGUAGUCGGGGAUGGCGGAGAUUGGAGAACGGCGGCGGCUACGGCGGCCGCUCGCUCGGAGAGUCCGCCAUGGUUCCGCUGGCGCGUUGAUCCCCCGGCAGCUCGGCACUAAGAAUGGUCGCCACGGACGCGCGCGCCAUGUCCUCCCCGGCGCCAUGGGCUCUGCAUCGGUGGCUAUGACUAUGUCAAAGGUGGUGUGUUCUUAGCUGCUGCUCUUCAUAGGUUCAGAAACUUCAGAGAGCAGCUGUUUUCCUUUUCCCCCCAUUUUGUUUGGUCAGUGCUGCAUUCAUGGAUCGCUGCAUGUGUUUCUCUAUGCGUUUGCGUUUCUCUGAACAUUUUGAGAAGGUUGUUUAUGCAGGAUUUGAAGGGUAGCUGCACGUAUUAGUUGGAUCUUAGUGCGUAUGUUGCUCUGCUGGGAUUGAUCCAUUUUUUCAGUCCAUUCCAUCAAUUGGUGGAGUGCAGUUCAGAUCCUUCAAUCCGUACAAUGAAUGCAACCGGCACUUCACCCGCAAUUUCGUCUAUCAUCCUGCAAGAAUUCAAUAAGAAUUUAGUCCUCUGAUGUGAUGGAACAUGCUGACCUUCUGUUCAUCUAAGCAUGGAUCAACUUACGGUACAACGGCAGCAUCCUUGAUAUCAGGGUGUGUGAUGAGAAGAGCUUCAAGUUCCGCAGGAGGUACUUGGAACCCCUUGUAUUUUAUUAUUUCCUUGAGCCGGUCAACAAUGAAAAUCUCGUCGUCGUCGUCAACAUAACCAAUGUCUCCUGU
Sequence
(XR_003242826.1):
CCGACCUUCUCUCGUGUUUUUUUUUCGUGUUCCCCUCCUUAUCUCCGACUCCCCACCCCCCCCCCCCCCCGGGCGGCGGCGGAGCUCCGGCGAGCCGAGGGAUCCGGGAAAUUCGUCGAUCCGGCACCGUGCCGGGGAGGUUAGGUAGUCGGGGAUGGCGGAGAUUGGAGAACGGCGGCGGCUACGGCGGCCGCUCGCUCGGAGAGUCCGCCAUGGUUCCGCUGGCGCGUUGAUCCCCCGGCAGCUCGGCACUAAGAAUGGUCGCCACGGACGCGCGCGCCAUGUCCUCCCCGGCGCCAUGGGCUCUGCAUCGGUGGCUAUGACUAUGUCAAAGGUGGUGUGUUCUUAGCUGCUGCUCUUCAUAGGUUCAGAAACUUCAGAGAGCAGCUGUUUUCCUUUUCCCCCCAUUUUGUUUGGUCAGUGCUGCAUUCAUGGAUCGCUGCAUGUGUUUCUCUAUGCGUUUGCGUUUCUCUGAACAUUUUGAGAAGGUUGUUUAUGCAGGAUUUGAAGGGUAGCUGCACGUAUUAGUUGGAUCUUAGUGCGUAUGUUGCUCUGCUGGGAUUGAUCCAUUUUUUCAGUCCAUUCCAUCAAUUGGUGGAGUGCAGUUCAGGGUGUUGGAUCCUUCAAUCCGUACAAUGAAUGCAACCGGCACUUCACCCGCAAUUUCGUCUAUCAUCCUGCAAGAAUUCAAUAAGAAUUUAGUCCUCUGAUGUGAUGGAACAUGCUGACCUUCUGUUCAUCUAAGCAUGGAUCAACUUACGGUACAACGGCAGCAUCCUUGAUAUCAGGGUGUGUGAUGAGAAGAGCUUCAAGUUCCGCAGGAGGUACUUGGAACCCCUUGUAUUUUAUUAUUUCCUUGAGCCGGUCAACAAUGAAAAUCUCGUCGUCGUCGUCAACAUAACCAAUGUCUCCUGU
Sequence
(XR_003242827.1):
GAGGUCCUUCCUGAGAAUCUUGCCAGAAGGACUCUUCGGAAUUGAAUCCGCGAAGAAAACUUUGUUGAGCCUCUUGUAGAAAACAACCUGUGAUGUUGUUCAAAACAAUCUGGAUUAUGAUGCUUAUAACGGUGAAACAUUGAUCCUUCAAUCCGUACAAUGAAUGCAACCGGCACUUCACCCGCAAUUUCGUCUAUCAUCCUGCAAGAAUUCAAUAAGAAUUUAGUCCUCUGAUGUGAUGGAACAUGCUGACCUUCUGUUCAUCUAAGCAUGGAUCAACUUACGGUACAACGGCAGCAUCCUUGAUAUCAGGGUGUGUGAUGAGAAGAGCUUCAAGUUCCGCAGGAGGUACUUGGAACCCCUUGUAUUUUAUUAUUUCCUUGAGCCGGUCAACAAUGAAAAUCUCGUCGUCGUCGUCAACAUAACCAAUGUCUCCUGU
Sequence
(XR_003242828.1):
CCGACCUUCUCUCGUGUUUUUUUUUCGUGUUCCCCUCCUUAUCUCCGACUCCCCACCCCCCCCCCCCCCCGGGCGGCGGCGGAGCUCCGGCGAGCCGAGGGAUCCGGGAAAUUCGUCGAUCCGGCACCGUGCCGGGGAGGUUAGGUAGUCGGGGAUGGCGGAGAUUGGAGAACGGCGGCGGCUACGGCGGCCGCUCGCUCGGAGAGUCCGCCAUGGUUCCGCUGGCGCGUUGAUCCCCCGGCAGCUCGGCACUAAGAAUGGUCGCCACGGACGCGCGCGCCAUGUCCUCCCCGGCGCCAUGGGCUCUGCAUCGGUGGCUAUGACUAUGUCAAAGGUGGUGUGUUCUUAGCUGCUGCUCUUCAUAGGUUCAGAAACUUCAGAGAGCAGCUGUUUUCCUUUUCCCCCCAUUUUGUUUGGUCAGUGCUGCAUUCAUGGAUCGCUGCAUGUGUUUCUCUAUGCGUUUGCGUUUCUCUGAACAUUUUGAGAAGGUUGUUUAUGCAGGAUUUGAAGGGUAGCUGCACGUAUUAGUUGGAUCUUAGUGCGUAUGUUGCUCUGCUGGGAUUGAUCCAUUUUUUCAGUCCAUUCCAUCAAUUGGUGGAGUGCAGUUCAGAUCCUUCAAUCCGUACAAUGAAUGCAACCGGCACUUCACCCGCAAUUUCGUCUAUCAUCCUGCAAGAAUUCAAUAAGAAUUUAGUCCUCUGAUGUGAUGGAACAUGCUGACCUUCUGUUCAUCUAAGCAUGGAUCAACUUACGGUACAACGGCAGCAUCCUUGAUAUCAGGGUGUGUGAUGAGAAGAGCUUCAAGUUCCGCAGGAGCCAACCGCCCUUGUCGAUGGUGUUCUUCGUGGACUCCGGGUCAUUCAGAUAACCUGCAAAUCACAGGCACGAUCACUGGCAUGAAAUGGCUGCAUUCAGAGUUUCAGACAUUCAUGUGCACUUGUUCACUCGUAUAAGCCAGAGCAUAUACCAGUGCAGUCUCCAUUACAGUUUUCAGUAAGAUAAAAAAAAAAGAGUCUAAGUAGAUAAAUUUUUCGAUGGAAACACUACUGUGUGUUAGCGAUGGUCAACUUCAGGUUUAAAAUUUGAUAGCCAUAUGCUAACCUGUUGAUAAGGUCGCAAACUAGACUAACCACCAUGAACUAUUUCCGGGCAUUUAUCUUGCCAUGAAUUGUUGGAUAAUUCUUAGAAAUAUCUCUCCUCAGGUCACAUUCAGACAGCUGGCGCCGAAAGCACCAUAGUAUUCAUCUCCUAGUGCUUCGCUAUACUAGUCUAUUCAUAAUCGUAAUGUAGAUUAUUUAUAGCUUUGAAAUAGGACAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
29.88%
HE_num:
HEP:
69.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.60
Avg Expression:
18.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.45906749418895 | 5.92920334683827e-08 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.20187200924725 | 0.00128404701761467 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.251791611956 | 0.00012359086583697 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.12765672298989 | 0.00625386461312537 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.48571571958446 | 2.44193213621858e-09 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.1820291939559 | 0.0169099217439336 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.54650791529557 | 0.00475114526543683 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.29484218648306 | 0.0013230503149147 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.54660031340146 | 0.00489169675240783 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.54667431286625 | 0.00476618129471928 |