RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939247

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

6363451

End:

6368971

Strand:

+

Ref_name:

LOC112939247

Sequence
(XR_003242770.1):

CGCCGCGCAGCCACCCGGCCCCGCUCCAUGCCAAACCGACCGCCGCCGUCAUCGUCGACGUCAUCCAUGGCCCCCGCCACUCCACGCCGCACCCGUCCAAGAGUGGGAGAAGCAGCUGCUCUCCCUCUCCUCCUCCUCCUCACUCUCCCUCCUCCUUUUCUCGUUUUGGCAAGGGACCAAGCCCCUUUCCCCCUUCUUUUUCCUUUUGCCCAACACCGCCGGCGUCAUCACCUGCCGCCGCCUUGGCUGCACGCGUCGACGACCGCCAGCUCGUCGCCCUUGCAUCCCUUGACUGCCAAUGUCGGUUUCCCUCCUCCAAACCGACCUCUCCUCCUCGCCUAUAAGGCCGAGUCCCUCCUCUCAAUUUCCCCGCUUCAGUCUCCACCGCUGUAGCGCCAUUACCACCGAACCACCAUCGCCGCCUUGUUGCCGCUUGUCCCGCUCUCGUCGUCGUCGUCCGUCGCCGAGCACCGGAGGAGCCGGUGCGAGCGUGAACGCGUGACGAGGAGCUCCGGGCGCCACCUCUCCCUCUCUUCUUCCCCGGCGCACUCGCCUCGACGCCGCGCCGCCUCGGCGUCAUUCGCCGUGCGCCGCCGCUCGGUCGCGUGCCGCCAUCGGCCUUCCACCCCUUUCCAUCCCCAAAUCGCCGCCGAUACCGUUCCCGCACACCGGCUCGAGCAGAUGAGCAAGGAAGAUGAGUCUGAUGCAACGGCCACAAGGGGUGCAGGCUCGUGAUCAAUGAGAUGUACUUGAUAGUACAGUGACAAGGGGUCAUAUAGAGGUGUAGACGAGGACUAGAACAGCACAAAUCUACGAAGGAAGGGGAAAACAGACCAAGAGCAAGCGAGCAGCUGGACGAAAGAACUCGUCGCUGCCUUACUCGUCGGACGCCACGGAUGGAUGGCCUACCAAACAAAACUAGGAGGGGUAAAGGAAGGUAGAGAAGGGUCGGUUGAUCACUGACAGGUGGGUCUCACAGGAUGAUUUAGCGGGUUGGACCAAGUCAAAGCGCUACAUCGGUAAAAUCGUCUUCCAAAAAAGCAGAAAAUAUAUUGUAUAUCAUCAUGACUUCAUUUUUCGCAUACUAGAUCUUUUACAUCGAUUUCAUUGUUAAACAAGUUAUCACAUUUUGAGCUUCCCCAUUGUACAUAAUCGCAGCCCUCAGACCUCAGAUAAUACGUAAGUGAAAGCUUCCUCAACCAUUUGUCAGAAAAACAAAGAUGAAUUCGACAAAUGUUUGAGUCACUAAUCACUAUACAAUAUAAAUCCUGAAGAGGAAUAAAAUGGAAAAA

Sequence
(XR_003242771.1):

GUUUCCUCGGCCGCGUCGUCGGUUGUAUUCUCGGGCUGUCUGAGCUGCAACCUAAGUUAAGGCUCGAGCAGAUGAGCAAGGAAGAUGAGUCUGAUGCAACGGCCACAAGGGGUGCAGGCUCGUGAUCAAUGAGAUGUACUUGAUAGUACAGUGACAAGGGGUCAUAUAGAGGUGUAGACGAGGACUAGAACAGCACAAAUCUACGAAGGAAGGGGAAAACAGACCAAGAGCAAGCGAGCAGCUGGACGAAAGAACUCGUCGCUGCCUUACUCGUCGGACGCCACGGAUGGAUGGCCUACCAAACAAAACUAGGAGGGGUAAAGGAAGGUAGAGAAGGGUCGGUUGAUCACUGACAGGUGGGUCUCACAGGAUGAUUUAGCGGGUUGGACCAAGUCAAAGCGCUACAUCGGUAAAAUCGUCUUCCAAAAAAGCAGAAAAUAUAUUGUAUAUCAUCAUGACUUCAUUUUUCGCAUACUAGAUCUUUUACAUCGAUUUCAUUGUUAAACAAGUUAUCACAUUUUGAGCUUCCCCAUUGUACAUAAUCGCAGCCCUCAGACCUCAGAUAAUACGUAAGUGAAAGCUUCCUCAACCAUUUGUCAGAAAAACAAAGAUGAAUUCGACAAAUGUUUGAGUCACUAAUCACUAUACAAUAUAAAUCCUGAAGAGGAAUAAAAUGGAAAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

414

LEP:

84.15%

ME_num:

77

MEP:

15.65%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.87

Avg Expression:

1.54

Tip: OSA-LNC112939247 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"3.385948412791810.00355724072124486
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA4.116866381629440.00135931946168506
3Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"3.652245099875280.000219455528213925