RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939097

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

20564557

End:

20565669

Strand:

+

Ref_name:

LOC112939097

Sequence
(XR_003242617.1):

UUAACAUAUUAAUUAAGUAUUAAUUAUUUUAAACUUAAGAAAUAGAUUAAUACGAUGUUUCUAAAACAACUUUCUUAUAGAUCUUUUCUUAAAAAAUUACACGGUUUAACCGUUCGAGAAACGUGCAUGCACAGAAAGAGAGAAAUCUCUCUCUCUUUGUCCAUGGCUCAAACGUGUGCGCGAGGAAGGAACCGCUUGAGCAAUACUCUGGCCCAGUAUUGUCAAGUCUCGGGCCCCAACAUUAUUUGGGCCUAUCCGGCCCACUUGAGCCAGGCCGGGCCAUAUGGGCCUGCUUGGAUUCCCCUUCAAGCGAUGCACGCGGUGAGCGGCGAGACGCGCCGCAGCGAUGGCGGCGGCGGGAGGAGAGCGAAGGCCGGGGCUGCCUUGCCGGCGGCGAGGUCGAGGGCGCCGGGAAAUCCGUGGCCCUCCUCCUCCGUCGUCGGCGCAGGCCGCCGCACGCGCCGGCCUCUCGGGGAACGGUAGGAAUCACCACUCCCUCCCCUAUGGACCCCGCGCUGCUUCCAUGGGCCUGUACGGCUGCCCGCAGCCGCACGAACAGUGCAGCACUCACUUUGCGAAGCCGCAGCCGCAGCCAUUGGCCUGCCGAACAGAUUGGUGAGAUUGAUGCAAAUUUUCCGGAGCGAAGUUCAAAGCAGAUUGGCUCGUGGUCUCAGAUCUUCAGUAUUUGUUUAGCGUGGCUACGCCCAUUUUAUAGUCGUUUUACUGUAGCCUGAACUGAACUGCUUCUGUGGUAUGUCAUCCACUCUGAUUUAGUAGCUUAAUUAACUUGCAAAAGUGUAACUUUUAUGAACCUUGUUCGACAAGAUUUGAUCAUUAUCUUCCAUGCAUGGCAUAUUAAACGGCUUUGUGCUUCAGUUGAAGACAAAAAAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

366

LEP:

74.39%

ME_num:

125

MEP:

25.41%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.85

Avg Expression:

1.41

Tip: OSA-LNC112939097 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.213972947909183.21751394802876e-06
2Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"-4.709255625064690.0316676981519973
3Nipponbare // leaf // control--/--Nipponbare // leaf // drought-4.709291258356080.0318740580976118
4Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"-4.709448647342810.0317045452857081
5Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-5.416002217548493.16892914202372e-05