Chr:
Chr5
Start:
837756
End:
841621
Strand:
-
Ref_name:
LOC112939073
Sequence
(XR_003242484.1):
GGACAAAGCCCACGGCCCACCCAAGGCUUCGUCUCCCUCCUCCUCUCCCCUUCCCAUUUCGCCGAUCCCACCCACGGCGGCGCCGCCACCGCCACCGCCACCGCCCACCGGACUUUGUGUAGAGAGCUCGAUGGGAAUCCGCGGCGGCGGAGGAGACCGGCCGGCUCAUGGAGGGGAAGAUGCAGGGCCACGCGUGGAGGAGGCCGGCUCAUGCUUCUUCUUCUCCGUCGAUGGGGACAGCACGUAAUGGAGUUGGCAUGAUUGAAUUACAGGAUGUUCCUGCUCACUGAAACAAGUAAAUGAUGACAUGAAAGGCCGAAAGCAGUGUGUUUCUACCCAGGUUUGAUCCAAGCUUGUGUCGGCUGAAAAUUCAUCAUCUCUUAUCAUGUGCUAGCCCGCCUUGAUUGAUUGAUGCUACUGGACAGUUUGGGAUUGGUAAUUUUCUGGGAGUGCCUUAUGGGGACCAUCUCCCAUCAAUUGUUACUUGCCUCCUGAAUUACAUUUAACUGUGCUAUCUUGUUUGCAAUUCAGGUAAAGUCUCUGUUUAGGCUGUAUCAAUCAUGCAUGUGAACUAGUUAAUGCAAAGGACCUAGGAAUUGAUGAAAGUAUUAGGCAUCAGCAUCAAUGGAUUAGCAGCAGCUUCUAUCAUCCUGACUCAAUUCUGUACUCCCAGGGACAGCAGUUGCCUGCUGAUGUUGCUAGGCCACUAGUACUAUGUAGUAGUAUACAUUACAUUGGAUAUCUCAAUCAUUUGAUUAAACUGUAUAAUUUUUCGGCGAAAGCUACCUUUGAAUGGUGAUGUGGUUAGUUUGUAGAUCAUGCACUGACUAAAUUAAGUUUUCCUCUAAUGAAAAUGGUAGAAGGUUUACUCUGUAUGUAAUGGAACACAUGUAAUUUUUGUAUGCUUUAAUAUGAAAAUACCCAUGCAGUUUAUCAGUUUGUAUCCAGUGCAUUUAGGAAUAUCUAUCUCUAGUCUGCAAGUUAUUUUUUGGGGAUAAAAUCCUUAUUGUACUCUGAACUGUUUUACUUGCAUGUGAUUAGGAGUAGGAAGUAAGAAAUCCCCUCUUAUCUGCUCAUGUGAGACCUAACAGGCUAAUCUACCAGGAUUAAUUAAUUAAUUACAAAGGAGCAGUUAUGGAUUAUCUUACACUGGAAAAAGAAGUGGCCUAGUCAAGGAGAGUUUUCUUGGAGUGAGCUCCUUUGUGUUGAAAAAGAUGAUGUUGGGACAUAUGCAAUGGAUUUGGGUGCUCAAAGCAGUUGGUCACCCAUGUUCUGCUCCAUAAAUGAAAGAGAUGCAUGGGAACAAGCCUCAUGUUUCCAGGAAGAACAAUGGCAAAGGAUAACAGAUUUGUCUCUUCUCUUUUGAACACCUGUUAAUUAGUUUAUGAAAUCCUUUCCAACUGAAAUUUGGCACCUUCUGUGGCAGUCACUACCCAUUGCUGAUGAACAUGGCCUAAGUUUCAGUAAGUGCAAUCCCCUAUAUUAAUGCUUGAUAAGUACUUCCUCCGUUUCAUAAUGCAAGACUUUCUAGCAUUACCCACAUUCAUUUAGAUGUUAAUGAAUCUAAACACAUAUAUAUGUCUAGAUUCAUUAACAUCUAUGGGUACAUAGGCAAUGUUAGAAAGUCUUACAUUGUGAAACGGAGGGAGUAGCAACUCUGAAACUUGAAGAUUAAACAAACAGUAAUUUCCAAUGGAAGUUUUUGCUAAUGUUCGUCAGAACACCAGAUUUUUUUUUCCUUUUGAAUUUUGCAUGAUUGCCUUAAAUUUGUCGUCCAUUGUUGCUAAUUUGAUCAAAACAUGCUACAUUAGACAUGCUGAGGAUGUAUCAUAAAUUACUCUGCAAGUUGUAACAUCCAAAGUAGAUGGAUACUAGCAUACAUCAAUGUGCAGAGAGCAUAUCAAGAAUGAAUAAGCUCUCUACCAAAAGGAUAAAUAAAAUUCCGAUUCCAGCCAAGCCAAGGGCAUGAAUGAACUCGAUAAACCUAACAAUCUCUUUAUCUCACUGCAAAGCAAGAAUUACUACCAUGUCACACUAUGAACACCCUCGAUCACUCACUCACAAGUUGAAACGUCAAAACAAAAAAUAAAAAAAGAGAGCAAGGAACAGGUUUAAUUAAAAUUUGAUACUAACUUCCUAUUUACAUCAUAAUUAAGCAGGAUCAACUCUAUAAUAAUUCUAUCAUGACGACUCUUAACACUAAGCAGUUAGCAUCUACUAAUGUUUUUGGUUCAUGCAAAUAUUCGCUCGCCCUCAAUGGUAAUCACAUGUCACUGACAAGUGGGCCCUCAAUGGCAAUCCCUUGUCACUGACAGGUGGGCCACACGACCACCACCUAACGAACCAACCGGUCGUAAGCUGGACGCACGACAGCCGUCCGAUCCCGUGCACACGACAGCAUCGGAUCGGACGGUCAGUGCAGCCGAUGCCGCUUGGCGCUGAACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.35%
ME_num:
MEP:
39.84%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.76
Avg Expression:
3.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.03377980196102 | 0.000255724784945615 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.64966185533766 | 0.00201275085538322 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.3579551601099 | 0.00426117174709176 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.9696301986803 | 1.55344093562901e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.65752538325163 | 1.31393830108555e-05 |