RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939040

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

15598040

End:

15600224

Strand:

+

Ref_name:

LOC112939040

Sequence
(XR_003242427.1):

ACCCGCGCGCCACGCGUGUGAGCUCCUCCUCUCCUCCUCCACCGGCGACCGCAUAUAAGCCGAUCGGCCGACCAACCUUCUCUCUCUCGCCCUUGUCUCGUUUCGCGGAAGAACCGAGGAACCCCGCCUCGGAUUCGACGGGAACGGAGGUGCCAUCUCCGGCGCCGGCGAGAGAAGUCCUCGACGCUGUCGCAAUCCAAUGAGCCCCAUUUCCAUUCAAUAUGCGUUCUGUAAUCCCCUCUCAAUGCCGUCUUUAACACAACCAAGAACACCUCAUUUGGUGCACCCAAUCUCCAGGAACGCGACCGCGUCAACUCGGAACACCGUAGCGCUCUGGACGCCGCAGCUUCACCUUUGCCUGUCGCCCGGCUUCAACAGUUCGUAACAAGCUGAGCCACUUCGCCACGAGCUUCAUCAACACCUUCAGAUCAAGAAUCCCGAAGUAAUCGACGCGAGGUGGACCACGAUGGGAGAUCCUCUUCUUCUUCCCCAAUUCCGGCCGCCGACGCCAUUCCUUUCUUUCUCCUUCUCUGUACAAGCCCGGGGGUACACCGUAGCAGCCGCGCCGUCGCCGAACCAGUACACCAUCGCCAAGACUUCGCCGAGCCGCGUUCGCUUCUUGACGAUUCGCCGCCGAGUCUCGAGGAGAUCUACUUUGGAGCUGAACAAGGAGUGGAAGAGCAAGGCAAGCCACCUCCCCUCUUUGAUCACAUUGAACCUAUGAUUUGGUGGUUUUUGAAAAGUUUGCAAAAUAUGCAUGUCUAUUGUACACUAAUCCAUUAAAAUCUUGUAAAAUUUGUUAGAUCAACUCCUUUACUUGCAUUAUCACCUAAACUCCACAAAAGACCUUAACCAUUAUUUCAAACCUUAGGAACAAUUGAUUGUGUCACAUUAAGAACGAUGUUUGAAGUCACAAGUCUAUAGAAAUGCUUAGCCAUGCUUAGUGAUGAGUUUACUUACCAUUUGGGCUCAAUUACAUAUAUGAAAUGAUUUAUUUUGUGAUCUGAAUUAAAAUGAUAAAAUGUGAUAUUUGUUAAAUAAAAUGUUGGAAAAUGUGGAUUUUAAGUUUGGGCCUCAUGUGGUACACAUAUGGUGUUUAGUUGUGUGUCGAUAGGGGGAGAAUGUGCCCAGACCGACCUAAGGACUUCACUCAAUGUCAGUUCAUUUUGUAUACAGUACAACCACAUGUGCUAGUAUGGGAUAGCCCAAGCUUAGUAAAUUAUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

472

LEP:

95.93%

ME_num:

19

MEP:

3.86%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.98

Avg Expression:

1.22

Tip: OSA-LNC112939040 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.538630302041540.0363861559935851
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.678490371870720.0345684038596041
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-4.793777747660790.0274795040165283
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.495194903772720.0368229309181762
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-4.970455733203750.0232652452867052