Chr:
Chr5
Start:
23900167
End:
23900808
Strand:
+
Ref_name:
LOC112939035
Sequence
(XR_003242417.1):
ACAUCCCAUCGAUUUUAUUACCAUUUGUUUCAAUCUUGAUUGUUUUCUUUAUACUAUCAGAUCAAAUUAAGCAUAUCUAUUUCAAUUGGUCCUCAAGAUGUUCGUCGAAUUUUACUGAAGCGAACCUAAAAGUUCAGUUAUGUCAGGAGACUUGCAGAAGUGUUCUGUCAGGAGAUUGGCAUGAGCGGAUAGUGAGGGGAAUUUACCAGUGUUCCCUUGACUUGGGUGGAGACAUGGCCCUUCUCAGUGUCGGCCACGAGCUUGGAGAGCCCGAAGUCGGCAACCUUGGCCUUGAGGUUGUUGUCGAGGAGGAUGUUGGUGGACUUGAUGUCGCGGUGGAUGAUCGGUGGGUCAGCGAGCUCGUGCAGGUAGGCAAGCCCUCUGGCCGAGCCAAGCGCGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
62.6%
HE_num:
HEP:
11.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.80
Avg Expression:
8.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.42873571346172 | 0.00657294722571752 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.74443177591259 | 1.9698938418644e-06 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.82386651435085 | 0.00139478645510136 |
| 4 | Nipponbare // coleoptile // wild_type_plus_1hr_shade--/--Nipponbare // coleoptile // wild_type_plus_1hr_white_light | 4.32526016979144 | 0.00155788613205091 |
| 5 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.72281965222758 | 0.00616432195859641 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | -3.30899402754688 | 1.62545460471368e-13 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.87266506708292 | 2.3222692042192e-07 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.92636107781645 | 0.000318484910177808 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | -3.32728307273982 | 2.67700927585606e-14 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.72123260909049 | 0.0166012566056956 |