Chr:
Chr5
Start:
9454234
End:
9455832
Strand:
-
Ref_name:
LOC112939028
Sequence
(XR_003242364.1):
CGCGGUACCGCCGCCGCUCGGGCUCUGCUCCCCUCUGCCGCCGCCGCUCUGGCUCCGCCGCCAACCGCUGCCACCAUCCGCUGGCGCCGGCGCCACUACCGCUCUGGCUCCGUCGCCAUCCUCCGCCGCCAUCGCCACUCGGGCUCCGUCCCCAUCCAUCGCCGCCAUCCGUCGCCGCUAUUCGGGCUCCAUCGCCGCCGCCGCUCGACGGCGAGGGACGACGAAGAUUACAGCGACGGCGAGAGGGGAGAAGCCAACGGCGGCGAAUCCGUGCGCAACGAAGGCCCCUCUUCGCCUGCAACUCGAGAGGCGAUAAUAUCCGCGCGACGGCGACUACACAGACGACAGCGGUGGUGGCUCAUGACGACAACCUCAACAACGGCGACCUUGACGAUGACCCGGGGCGUGAAGGCGGAGGCCGCGCGGCCCCGAAUCCAUGCCGCCGGCCAAAUCCGCGCGAGGUCGUGCGGCUGGCCAAAUCCGGCAGGGGUGGAUACCGCGCAGAGGUAGAGUCCUCCAGACGACGGCGGCCGCGGCUAGCGCCGACGCAGACGACGACGGCGGUGGUUGGCGACGAUGACCUUGGCAAGCACAGUUGAUGGGCGACGGCGAGCGUACAGGAGGCCGGGGCGGCGUCGGACAGAGAAGACUAGAAGAGGGGAGAUGGAGAAAGAGAUAGAAAGUGGGACCCACAGUGGGGCCCACCGUUUGGCCAGGGGAGGAGGCUGGCUACAUUUGGCCAUCCAAAUAGCUUAGCAGUUCAAAUAGCAAGCUGUUGGAGUGAGUUUUUUCACUGUUUGAGCUAAAAUUUAGCUUGGAGAGCCAUCUAGCAACUCUGUUGAGUUGCUCAUCUCAUACGGCCACAAGCUGCACGCAGGAAGACUUGAACGAGCAUCUCAUACGGCCAUAGGCUGCAUGCAGCUUAAUGCUUGACUUGACUAAUGAAGUCCGAUCCUUUCAGUCUCUCUCUCAAGGCUUUAUACCAAUCUCUCUCUUGGCUUCUUCGUUGGUGGUUUGGGUGGGAUUGGGCAUGGUAUAUUUCCGCGUCGACCUCGCGACGGUGCUCUUAUCGUUCCGACCACCGCUGCAGCGCGCGUCCCAGGAUGAAGAACGAGCAUGCCGGUAAACUAAAUUUGCUGCCAGCACUUCACCGGGCCUGCUUGCCAUGCGGUGAGACAUCCUAAAUUUCACCCCUAGUAAGCAUGUGCACGUAAUUAGAACGCGAAUCAAAAGCACAAUACGAUACAGACGAAGGAUCUGCCCAAAACUGGAUAUAUAUUUAUGGUCAAAGUAAACCAACAACGAUGAAAACAGAAUUAAGCUAGUAUUGCAGUAUAAGGAGCCCUCGAUUGCUGAAUGUACAAAAUCUCUUGAGCAUCUAAAAAUCUGGAUCUCCAGUGCAACAAGAAUGUCUGAGAAGCAGUACACUGUCAGUAGCUAAACACUGCACCUUAGUCUCUUCCACAUGACAGGAGAUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.07%
ME_num:
MEP:
88.82%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.66
Avg Expression:
4.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.27912128392237 | 0.00722188119008194 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.45985092658466 | 0.0212390621969505 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.32249615633477 | 0.0079147689671338 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.40894113271299 | 0.00445045242427353 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11847702703758 | 9.33260453598054e-05 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.10360091896491 | 0.0280594371792621 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.54767126374238 | 2.89267680989911e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.2376082935794 | 7.7390002275691e-06 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.49338504271317 | 0.0445596263015153 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.30204943686111 | 0.00051636200753993 |