Chr:
Chr5
Start:
24646952
End:
24648132
Strand:
-
Ref_name:
LOC112938991
Sequence
(XR_003242276.1):
GCCAGUCUCAAUGGGCAUUUCAGGAGAGUUUCAUGCACAUUUAAUGCAUUGACACAUCAGCAUAGAAGGCAUUUUUGCAUGAAAUAGGGAGAAAAGAGGGGAGAAUCGUUUCACCAUGGUGAAACGACUCUGCGUCGUUUCCUAGGCCUCGGUAACUCUGUGAAACGGCCAUUGAGGGCGAUUUUUGUUUCAUCCUCGAUCCCGUGCGCAGAGGCAACGGCGAGCUCGCCAUUCCCGCGCGCGCGCGCUUCUCCCGCCCCCCAGGUCCUUCUUCCCGCCCCUUCCUCCCGCCUCCUUCUCCCCAAUCCUCCUCCUCCCGCCCGCCCAUCAUCUGUCCAUUCUUGAGCGUCGUGGCUAGGGUUACGGCACCAGAUCGAGCAGGCAUGGAUCCGCCGCCGGCGUCCGAUUCACGGCGGCGCGGAGGUGGCAGAGGAGGCAAGAAUCGCGCGGGGAAGCAGCUUGGACUGAAGAGACCGGCGGCGCCUGCUCCAUCAUCGCGUCCAGGUUCCCCAUCACCACCGCAUCGAACCCCGCUGCCUCCGAUUUCCACCUCCGCUGCGUCGAUUUCGGCUGCUGCACCGACUCCGACCCCUGCUGCUGCGUCUUCGUCCCCUGCUGCCCCGAUGAGCAACAUGCCCCCAUGGCCUGCUCAAGGAGGAGGAUGGGGCGGCAUUCCCCCCAAUUUUCCAUUCGGUCAUGGAGAGCAGCAAGGCCCAAACUCAUGUAUUGAAGGCUGAAGUCAAUAUCAUCCUGCAGUAUUGAAGGCUGAAGUCUAUUUGAAUUAUUUUUAUCUACCUUAUCUAUCUUUGUCAAUCUGGUCCAGUAUACCAGAUUUCAGUCACUUUAGUUUAUCCAGUUUAUCGUAUGGUUGAACUUAUCCAAGUUAUCUUAACUACCUUAUAUAUGGAUGAACUUUGCUAUUCCAUGAGCAGUUUGCUUGCCGUAUGCAGUUAUCCAUUUUAUCUGAACUUGUAUGCUUGUUCCAGAAAUAUAUUUGUAUAUGCAUGGCUACAAAAUCACCUGGUGCAUAUGAUCAGGCUGCUAUCAAGCAACCGAAAGGCCUUAAUUGCUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.86%
ME_num:
MEP:
24.39%
HE_num:
HEP:
21.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.77
Avg Expression:
15.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.95259442903366 | 1.4228914422781e-07 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 4.2157348444802 | 0.00534697614524317 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 5.67815086876962 | 2.07345358103257e-05 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.22258412993055 | 0.00743404945898101 |
| 5 | 9311 // leaf // control--/--9311 // leaf // salt | 4.19305126778742 | 0.00326051722520577 |
| 6 | 9L136 // leaf // control--/--9L136 // leaf // salt | 4.05396036964842 | 0.0180424042418185 |