Chr:
Chr5
Start:
9060596
End:
9062768
Strand:
-
Ref_name:
LOC112938989
Sequence
(XR_003242273.1):
GAGAAACACACAUCCAUCCAUUGACGAGCAACCCUUCAUCCGCAUUCAUUCAUAGCAAUAUUCACACACAUUCCUCACACAUUCAACGACACAGCCAUCGAGCAAUUCACUCACCAUCAACACACACAUAUGCAGAGAUCGAUAUCAAAAGCAGCUCUUCUAUUCCUCAUCUGAUCGAUUUGCACAAGCGGCGCAGACGCAGCCUCAUCGGAGUAGCCAGGCGGGACCAGCUCGACGGGAGGAGACCUCACCGACAACAAGAGGCAGCAUCAGAUCAUGGGCAUCAACAACCUCUGUACCAUGGGAGGCAAGCCGCCGUUUUUCUACGUCGUCAUGACCGGCCGAAUGACCUCGUCGCGCUACCUCGCCGGAGCAUGUUGUCACGGCAUCGUGAAUGUCGUCGAGUCGUGCCCGACUGAGGAGGUCUCGUCGGAGUCGUCGGAAACGUCGCCAAGUCUCCCGCGUCUACAUCAACCAAACACAUCAUUGGGCGAUGGAGAUUGUCGCACUGCCCUCGGAGCCAUGGUGCUGCCCUCGUCGGAGUCGCCGUGCCAAUCAUCUGAUCGACAUCAUCCAGUCGAGUCGCUGGUGAUGACACUACUCGUUGCUGUGAUCUCAUCGCCGACGUCCGCCGGCCAUCUUCGGUGGUGUUACCAUCUUCCUCACACUCGUCGUUGAGCCGCGUGACGAGAAUGCCAAUCGAAGCGCCGCUAGCUGCUCGGUGCCCGCAUCGUCACGCUGGGGUUGCUAAGCCGUUCGUGAUGCUGUGAAGCCAUCCCUUCAUCACACCGGAGCACCAUCGCUUGGUGCCCGCACACCGUCGUCAAGUUCAUCUGCGAUGCUUUCACCUCGUCAAGCCAGAGUCAUCGUGCCGUCCGUCCGUGUCUCCUUUUAUCUAUAGUAACAUGAUGAGAUGCCAUCUGUCUACAACGCUUCCACUUCGUCAUGGCGAGAUCGAUGCUGUCCGUCCAUGAUGCACUCUCUCUUCAUCACGCCAAGAUGAGAUGUUGUCCGUCCGUGAUUCUCUCCCUCUUCAUCGAGAUCAAUAUGCCGCCGCUUGUUUGUGUAUUGGAGCGUCGCUCGUCUAUAUCAACAUGAAGAAAGAAUAGUGCCGUCUGUGAUGCCAAUGUACCGUUCGUGUUAGAUCUACACCAACCAAUGUCCUCGGCUAUUCCGCCGAUGAGGCAUUUACUUCUUCCAAGGUCGCCGUUACUAUCGGCACACUCAUAGAGCCCCUUUUGCAGGCUCGUCAUCAUAUCAACCGGAUCAAUAGUAGAUUCAUCAUCCGAAGGAGGUGCCAAAGCCACGUUUGUUCGGUUAUUGUCUGCACCAACUUCUUCAUCAACAUCUUCGUUACAAGUCCCUGUUGUAUAAGGGACAUGACGAGUCAGGAGGUGCUUAGCCAUGGAUAUCCGGCUGCCAUCUACACCAACUGUCAUCGUCAACUCUUUGUUACUUUGAUCCCAUCAAGUCAGGAGGUGCCCAGCCAUGGAUAUUCGGCUGUUGUGUACACCAACUGACUUGACCAACUCCUCUUCCCUUUAACACCAUCCUGAUGUCGUUGCUGAUCCAAGCGACACGAGAUCUAUGCAUGUUGAAGAUCAAUCCAUCUACUCCACCACGUUGCUCAAGACUGAUGAGGCGGAGCGACGAGGGUGGGCGGAGCCUAUAUGAAGGCUACAUCACCAACACCGGCGCACGGACCGAUGAGGCCGCGGAUGCGUUGCCGGCGCCUAGAUAUAUAUCCACAAUCUUCACCAACAUUCAUCGUGCAUGGAGAACGUGAAGCGAAGACGACGAGACGACCACAUGCAGCUUAAUCGGAGGUGCUCUGUAGGCCUAAACCUGUGGCAGUAAUUAACUAGGAGUCUUUCGAGACCCCAGGAAUUAGAAGACCACUUAUCCAAGUUUAGAUUUGUCCAACGACAGGCUAUGGAGCGCACAUACAUAUAUACAUAUAUAUUACAUUGGGAAUUUGUAUUUAUGAUCCUUGAGAUUAAUAAAGCACAUGUUCCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.82%
ME_num:
MEP:
8.13%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.99
Avg Expression:
30.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.59757695099975 | 0.0349997901082996 |
2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 5.44926655496927 | 0.000637046111142738 |