Chr:
Chr5
Start:
26730255
End:
26732058
Strand:
-
Ref_name:
LOC112938987
Sequence
(XR_003242269.1):
CCCGAGCAUCUUUCAAAUACAUGGAUUUUAGAGGAUUUUUAUGUAAAUUGAAAUAUCUCCUCCGCCGCCUCGUGCGUCCGCGAAGAUCAGAUGCCAGUGGCAACCGGCGAAAUCCCCGCGGCAACCGCCGGAUUCUAUGGAAAUCUCGCCGACGUCCGCCGGUAGCCGCCGCGGCCACCCGCCCUAGUCCCCCUACCAUCCCCCCCCCCCCCCCCCCCCCACACACACACACCAGAGCUCGCGCGCGCCGCUGUGAAUCAGCCAAUGACUUCCGGUUUCUCGCCCGACUCCGCCCAGUCUCCUCCCGGUUUUCCCCUCUCUGAGCUCGCCGAGAAGAUCUGCCGGCUGGAGAGCGGCGAGCACAAGGAGGAAGAAGCCGCCGCCGACGCAGAUGCGGUCGGCCUCUACCAUCUGAUGAUCAACGAGAGAACUGAGGCAGUUGGAGACACCAUAAUGGCAUCACCUCCAGUUUCUUCCUCAAGGCCACUGGAUCCUGCAUGGGUUCAUGCAAAAGUGAUUGGCAACUCAAAGAAUGCCUUGGCAUGUCUUCAUUUUUUUAACCGGAAUGUCCGAAGGAGGUCAUUCAAUGUAAUUAAGAUUGGAAGAAAAGGUUACAAGAAAAGUUUUACAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.83%
ME_num:
MEP:
46.54%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
2.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.07912590753706 | 0.0254011319880236 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.67266173334391 | 0.0203615177691699 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.48235782779288 | 1.0007159647141e-10 |