Chr:
Chr5
Start:
2655434
End:
2657420
Strand:
-
Ref_name:
LOC112938984
Sequence
(XR_003242263.1):
CUUAUCAGGCUAUUUACAAUGUAAGCUAUAGGGCCCGUACCUCAGCCUCAAAACUUGAUAAAAACACUUAUCUCGCAGUGCAAGCACCUAUAGUUAGGAUACUAAGCCCACAGCCGGUGGACCCCCACGAAAAGGCAUUGAGACAUCGAGUACUACUCCAUUGCCUCCACUUUCCCGAAAAGCCCUCGCCUCCUCUCCUCGAGUUCUACUCGCGCUGCUUCGCCUCCUCCCACUCGGCCGCACACGCCGUCGCGCCUCCUUCCCUCGCCGCCCGGCGUGGUCGCCGCCCUCAACGCUACCGCCAGCGGCAGCGACUUGAGUUGAUUUGGGGUGGUUUGGAGGCGGAGGAGGAGGCGGCGGCCACGGAGGAGGCGACUCCCUGAAGCAGCCGUGGAGGUCGGCGACGAGGAGGAGGUCGUCGAGCAGCUGCUCCAUCCACGGCCGGCGGCGUGGAGCGGAGGAAUCGGUGGCGGGAGUUCUGUCCCCCCACCUCCUUCCCCUCCCUCUCUGUCCCUCACCUCCGGCGGCCGUGGCGGACUUGACGAGGAGGCCGUGGUCCUCUUCGCCGAUGCAUCCCGGGCUUGGAGGUGGCGGCCGACGGCGUGGUCCUCGUCGCCGAUGCAGCCCACCCCUGUGCUCGUCGUCUCCGCGGGCGCACGAGCACGCGCGGGGCUCUAACCUGUGCGGAACGAGGCGGGCGGCGGCGGACAGCAGGCUGCUGUGCGUGGGGAGUAGUGCCUCGGCGUCCUUCGCGGCGACGUUGUGGCCGAGACGGAGGUGGGGGUGGAGAAGAGCCGCGGCUGGGGGCGACGUCGACGCCGCCGGUACAGGCGACGCGGCAGGACGUGCAGGCCGCCAUCGCCAUGGCGGUCGAGCUGCGGGCGCUCCACGCCGCGGUGGUGGCGGCGGCGCCGGCGCCAGCCGCAGCCCGGCCUCCCGCCGGCCGCGUCCCCCGCGCUCUCCAGGACGGCAGCGGCAGCGGUGGCCACCGUUGGCGAGGACUACCCGGUGUUUACUCCGAUGGCAAUGACGACCACCGUCAGAGUCACCUGCGGAGGUGACGACGCGGAUGACGCGACGAAGACGGCGACGUCGGCGGCGGGGUUCCUCCCGGCGAGGUCCAUUGAAGAAGAAGAGAGGAUCAAGAAAGGGGACGGAAGAGAGAAGGCGAAGCUAUCGCUAUUCCGAUUUUCGAGGGCGAAUCCGGGAUUCCGCCUCCCGUCCGUCGCGAGGGCACGAGCGCGUCGGGGUCACGCGGUCCACAGCGCACGGGACUCUGUUUUUUGACGCCGCGCGUGGACCCGCCGAGAGAAGGAAUCGCGGUGCUCUGCUUGGGGGCGAGUCGCUUUGCUAGGGCGCGAUACCAUCCGCCACGUCGGUGUUUUUCCUAGCUGGCCGAGUGAAGCACCGGUCCAACUCACCGCACUGUGAGAGGCCUCACUGAGCCUAGGGCAGCUAAGGUGCCUCAGUUUAACCUUGCAAACCAUCUAAAUUAAGUUCUAAAGUUUGUACACACGUUUGGUUUUUAUCAAGCCUGUAUGUAGCUCUGUUGAUCAAAAUAUGCACUUUAUAAUGUUAACUUCCAUCUUGAUGUUAUGAGAGGUCUGUUGAAGCAAAUUCUGCCUUCUGCUUCUCACAUUAAACUAGUAUAUCUUUUGGUUGGUAGUUAUUCUUGAGAAUUAUUUAUGUAGCUUGGAUUACCAACCAUUUGAUGCCCUAUGUUCAUUUGAUGGUAACCUCUGUUUGCUUAGGCAGCUAGUAUUAAUUUUCAAGCCUGAAACAACAUUGCAUUGUUUUUAGGCACUGCCUGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.47%
ME_num:
MEP:
40.85%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.90
Avg Expression:
5.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -1.65189911945346 | 0.00402553497822371 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.52370120732673 | 0.0285215607649375 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.93301016899042 | 0.021326381824928 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.71136112397504 | 0.00487767992020445 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.93719642812889 | 0.0489842601974782 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.60184061339363 | 0.00116316990141599 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.13708955745333 | 0.00409504086740393 |
| 8 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.1086091902127 | 0.00442607143351381 |