Chr:
Chr5
Start:
7233507
End:
7234518
Strand:
-
Ref_name:
LOC112938978
Sequence
(XR_003242255.1):
UGGCCACGCCACCGUCACUCUCUCGAGCGCAGCAGCAGAGUCGUGUCGUUUCCUCCGAGGGCAGCAGCAGUCACCACUGCCACCGCCGCUUUCUCGAGCGCAGCCGUCGCCGCUCCCUUCACGCUGCCGUUACCGCGCACCGGACCACGCGCACCCUCUGCGCCGUCGUCGCCGCUCCCUUUCUCCGCGCAUAGGAACCAUCGUCGCAUCUCCCAUUUUCCGGAAGAAGCAACCGCCGCCGCUGCCGCUUCCUUUCUCCACGUGCAGCAGCUGUGCUGCCACCACAGCUCCCUCCCUCCGCAAGUUGCCGCUGCGCCGCCAUAUGACCGUGCGAGGCGUGGCGUCGGCGCCGGCGGGCGGAGGCGGCUGUUCGGUGCGUUCCGGCGGCUGCGGGUGCGGUGGCUAGUGGCGUUGUACCGCCGCUCGCUGCGGCGGCUGCGCGCGUACUACACCAAGGCGGUCCAAGACUUCCUCGAGGGCGCGACGGCCAUGAGCACGCUGCAUGCACUCGACAUGAAGAAAUGGAGCAGUAGCACCGGUGACGGCAGGCGAGCGAAGGAGCGGCGGCGACAGGCGAGCGCAGCUGGUGGAGCGGCGACGGCGGGCGAGCUUAGGAGGAGCGGCGGCGGUGGCAGGCGAGUGUGGCGGGCGGAGCGGCGACGGCGACGGCGACGGCGGGCGAGCUUAGGAGGAGCAGGAGCGGCGGGCGAGUGCCACGACGACAGGCGAAGCGGCAGCGAGCAAGGUUGAAGGCAGCGGUUGAGAGCAGAGAGAGAAUGAGAGAGGGAGUAAAGGAUAUGGAAGAAAAAAAGAAAAAGAAAAAAAAUCAAAGGGUAGAACCGUACUUACAUAGCUGUUUCUCUCUUCAAUUUUUCCAGAUAUAAUAAAAUAAUCCCACGGGUGUCCAGCAGCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.83%
ME_num:
MEP:
39.23%
HE_num:
HEP:
8.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.86
Avg Expression:
6.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.93588080595167 | 0.00111433470183221 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.91798986274811 | 8.33342963139646e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.47642187403919 | 0.0312981141735239 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.39871612387906 | 4.24129479813937e-06 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.44922777799533 | 5.96017692534772e-06 |
| 6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -4.52216177454186 | 2.17276246632553e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -3.35250822469735 | 0.00812485889087825 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.69973868597177 | 0.00422103263931017 |
| 9 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 2.66993631800193 | 0.00685005297297032 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.98792339497043 | 0.000241609935375915 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.83964187691435 | 0.00262927712581759 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.61693314185903 | 0.00924567913602288 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -3.39182710447939 | 0.00100481507124802 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.37331108253575 | 0.00509095368301669 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.27123985777674 | 0.000619305201572685 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -3.52334679243897 | 0.0233283996988131 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.17143174386757 | 0.00019093040161129 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.01637796498108 | 4.86739522881987e-06 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.31753813995561 | 4.58000419771931e-05 |