Chr:
Chr5
Start:
8190686
End:
8191398
Strand:
-
Ref_name:
LOC112938962
Sequence
(XR_003242227.1):
GAGGACAUGAGGUCCAACAGCUGCAAUGGCUGUCCCAUGGAAUGGUUAUUGACAUGACAUGAUUUUAGCUAGGGACCAAGGAUAUUCUUCUGCUGACAUUCCUCCUCCCUUAUCUCCACCUCCUGAACCUCCAACAAGUCCAGUUAUUGUUCUUGAUGACUCCUAAGUAUCAGGUGUUAGAGAGGAAACUGGAGAUGACAGGGUAAAUGUUAUAGCUGAAGGAAUGUUUGGUGGCUACUUGACCAAUUCAUCUGCUAAUGGUGCCACCACCUUUCUCCCAGCUUUAGAUGAACUUGAUCCAUUUUAAUUUCAACUGGCUGUGGUCAUAGGGCUAACUUUUGGGAAAACUUGGUAGUUAUAGCGCCUAACUUUUGGGUAAAGCUGAUUCUUACCGAAACAUGUGUAAUGAAGUGGAAUUAUGCCAUUUUGAGGGCAAGAUGAUUAUAAUGCAUCCUUUGAAUGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.47%
ME_num:
MEP:
3.25%
HE_num:
HEP:
17.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.88
Avg Expression:
14.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.44440200537529 | 3.38158166220296e-08 |
2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.14919417882753 | 0.000887091481034022 |
3 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.22238646236506 | 0.0403137106872283 |