Chr:
Chr5
Start:
2445495
End:
2446286
Strand:
+
Ref_name:
LOC112938952
Sequence
(XR_003242210.1):
UCUCGAUCGCCUGCGUAUGUUUGAUAGCGUUACGUUCCCAGCAUCGAUCAUCGAUCGUCAGCAUUCAUGCCACAGCAUCAAUAUAUCUCCUCCUCCUUCUAAUAGAAUGAUAUGUAAUCCUUCUGUGCGUUCACGAAAAAAAAAAAGAGCAUCGAUCAUAUUCAGUCUCUGAGUCUCAAGAUGUCAACUGACGCAAAGGAGAAGCACCAGGUCCCUUCUACACCUGGAUCAUGAAAUUAAGGUUCAGAUUAAUGUGAUAAAAAAGAACUGAAGUUUGAAUCCAUAUGACCACCUGUGUGAUUAGUCUGGAGAGAAUCGUCAGGUAACAAUGUUCCUAGCUUGACUCUGGCAUGACUUGACCUGCUGCCUGGUCAUGCAUGUUAUCCAGAUUUCAGAAAAUUUAUCGUCAGUAGAUGUACAGGUAACUUCACAAUAAAUAAGAAGUAUUUGGAGAUAUUAUAUUUUCUUGUAUAUAAAUUGAUAUCUCCAGGUAUUUGAGGUAUCAAAAUUCUUAGUAUAAAAUUUAUGUAACUUGUGGUGAUUUUUUUAAUGAUUGUAAAAUUUCUUUCAGUUGUAAAGGCCGGACUGUAUUGAGAAAUGAAACAUAUACCUCAGAUUACUCUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.15%
ME_num:
MEP:
12.6%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.92
Avg Expression:
1.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 4.74533799576449 | 0.00114822007247645 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 4.41350037655624 | 0.00238640648572807 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -4.09095329873724 | 0.0185863997805248 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.37138136868959 | 0.00166271209633878 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.95797335367295 | 0.000943598756223554 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.70248457311944 | 0.000138836618256014 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | 1.35253381161884 | 0.0104428354781027 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.24871531846211 | 0.00168369011229706 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -5.98825051132187 | 5.90641740188586e-06 |