Chr:
Chr5
Start:
25616864
End:
25618038
Strand:
-
Ref_name:
LOC112938949
Sequence
(XR_003242206.1):
CGGUGCCGGUGACGGUGACGCCGCUGCCCGGCGGGAACGCGACCCUCCUGAGCCGCCGCCGCACCAGCUCCGUCAUGUCGCCGGAGUGCUCCUGCGAGCGCAGCGAGCUCUGCCCCGGUGCGACGCCGGCGUUCAGGGAGGCUCACCUGGGUCAUGCGAGGGCGGGAGCGUGCCGUGUGCCGCACCGCGGCGGCAGCGCAGGAGAUCAGCCGAUGCAUGUCGUGGGCGUCGUACAAGGCGUCAAGCUUUGGAUCGAUCAGAUCGUCGUAGACAUGCUGCUCUAGAGCUUUUGUCAGCUGAGGCCUUGCCUGCAUCGUCCAAAACAUAAAAGAAGAACAAAUUUAGUAGUCCUUACAGUUACAGAAUAAUCAGCCAUUAGUUAACGAGAUGUAACGCGAUGCUGUCACUGAAUCCACAAUAUAUAUAUAUUUUUUAAAAAAUGAAGUCAGAAGUCAGAAUUGGAUUGUACUAUGACACUGUACUAGUCUGUUGAAAAUCUGAUAGCAAGAAGUGGACCUGCAGGGGUUAAGUUUCGACAAAGUAUCAUGUCUAAAAGUUUUUUAAAGUCAUAGCCAGGCGGGGGCGGAGCGAGAGUAUAUUACGGGGGUGUACAGGAACCCAUGCAAGAAAAAUGUUUAGCUAUACCUUAUUUAUUUUCACCAUGCACCCCCUUCAAUACAAACUUAGACACCUGUAUCAACUUAAACUCAAUCUAAAAUAGAGUAAAUUAAACAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.45%
ME_num:
MEP:
31.71%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.86
Avg Expression:
3.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.22800976854288 | 0.0101403214718365 |
| 2 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.55079507700489 | 0.000108093428178284 |
| 3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.55071433593827 | 0.000110275869287909 |
| 4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.55061978663629 | 0.000108632039662028 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 6.58638346866885 | 4.71553721100841e-13 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.63596471156225 | 9.85607709510454e-19 |