Chr:
Chr4
Start:
2054568
End:
2055573
Strand:
+
Ref_name:
LOC112938800
Sequence
(XR_003242121.1):
ACUAGAAAGCUAAGGUAGAAGGAGAGUAUUCUGAAGGAACCAAGUGAGUGCAACUGAUCAACUUGCUACCGAUCGAUCUCACAACAACAUGAGAGGACAAGCAACAGAGGUGCUAGAGAAAGGCAACAUCAGGCUGCAGGACCGUGAAAUCGCAGGAUUAGAAGAGCAAAUCCGGACGCUUAGGAUGAAGCUUCAGAACCACGAGAGCUACGAGGAGCAGAAGCGCAGGGAGUACUACAACCUGGAAAGCGAAUACAACAAGCUGCACAGCAGCUACAGAAACCUGCAAGCCUGCCACCACAACCUGCAAACCAGCUACCACAACCUGGAGGCCAGGCACAAUGCUCUCAGGUGGCAAAUGAGUAGGCCCGGAUGCUGCGGAUAAUUAAGAUAUGGAAGAGUUUUUAUUAUAUAUACUUAUAUAAUCUAUGUGCAUGUAUGUCAUCGCAUGCAUCCAUAUAUAUAUACUAUAUAUAUAAAUAAUUCAAAUAUCAGGUAUUUUAUCCAUGUAAAUAUACAGUUACAUGGAUAAAAUCCCUUUAUUUUAAGAUAGAGGGAGUACGUUACUUAUAUAUGCAUGCUUAUGAUACCUACUCCCCUGUUUUAUACCUACAGAUAUGAGUGAUGUAUGUGAGUAUAACUAUACAUAUUUGUAAUAAGCUGGAUAUGACCCCGGCCGCUAGCUAGCAGCAAAAAUGUGUGCCAUACGUCUAUGUCAUGCAUGGUAGCUCACCUUCAUCUCCAUGCAUGCAUCAAUAUUGAUGUAAGUGGUCAGCAUUGUUGUUGUAUGAAAUCAAAUGUUUUAUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.59%
ME_num:
MEP:
10.57%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.91
Avg Expression:
2.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -6.08953267439401 | 0.000582414622162117 |
| 2 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -2.83082455443835 | 2.83419864702137e-05 |