Chr:
Chr4
Start:
25917654
End:
25927235
Strand:
+
Ref_name:
LOC112938759
Sequence
(XR_003242043.1):
GUAUAUGUAGGUGCUGAUUUUAAAUAAAACCGACAUCUAUGCUGUGAGUACCAUUUUUUAGAAGAAUCAAUAGCUAUAAUAUAUUUAUAGGUCUAGGUUUUUAAAAAUCGACACAUAUACUAAUAUUGUAGUUGCUGGUUUUAAAAAAACUAGCAGGAGCUGACCGAAUCCAACUAACCUUAUCUACUCCCAGACAUCCUUAUCCCCACACUUGCUCCCACUCCUUCCUCCUCCUCCAUACCGCCUCCAACGCGCCUCGUUGGCCUCAUCGUCGCGGCCCUCCUCUUCCCUCUCCCUCUCGCAUCUCCCCCGCGCAGCGGUGGCUGUGGCUCCCUAGCGGCGUGACGGCUCGUGAUCUGGCCCUCGAGCUCAGGACCUCCACAACGGCGAGGAGAAGGUCUAGAGAGGAGCAGCGGCGGCCUCCCCGCUCUCCCCUCCCACCCCUCUCAUCUCAUGAUGAUCUGUUGAGUUCUAGGCUUAAGAAGCUGCUUCCCGGCUUUAUUUAUCCACCCACAAGAUGAAUACGUGCUCCCUUGAAGAUACGGUGAUCAUGGUGAAGAGACACGUCUCGCUGCCGUGGAGAAAUUGAAUGUUAGCGGUACGGUGCAGGUAUGUGCCGAGUUUCUGAUAAAACAGUAGUAUAUGCAUAAGUGUGACACCUCAAGCAAACAACACUAUCUGUUCAGCUGAGUGGAGCAACUGAACUUAACCUGCUACCUGCUCACUAGUAGAAAAAGACAGUGGCUUUCAGACGUGUACAGGAUCUCACGUGCAUGAAUUGAUGAAUACUGCAUAUAGACAUGUAACUGGUAUCUCCCAUAACAAAUCAAUCUUGGCGCUAUUUCGUUCAUCAUCAUUCGUUUGUCAUGUUCCCUUGGGAGUGGCAGCAUCGAUUUAGUAAGAAAACAUCUCUGUUGUGCUUCUACAGAACUCCAUAUGGAAGCUAAUAAACAGUAUACUGAUACAUGAAAAUUAGAUGGAAGAUAGAAUUCAGAUAAUCGUAUGUACCACUCUGAUACCUGAUAGAAUCAGGAAGACACCAUCGAUAACGUUUAUAAACUGCGUCCUAUUUUAGUAUAAUCAUGUUCAUAAACCAAAUGGCAUGACACUCUGACAGUAACAGAUGAACUUCUUCUGACUGUUUGGAGUUCUCUCACGAAUUGACCAUGGAAAAGUAUCACAAAUUACACCCUUUAACUUACAUCAACAGCAGUUUUAGUAGCUGCCUGCCUCUAUGCAAAUUGCUAAAUUUGGCUAUGGCAUCGUAACUUCCAAAGAACGUUGCAAACAAGAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.85%
ME_num:
MEP:
7.72%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
1.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.73274048867065 | 0.0127965712511015 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.82991164691906 | 0.00811822331079422 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.97939177773786 | 0.00584149943130149 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.23501542016716 | 0.0308084015921849 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.40167688634466 | 0.0247439161127713 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -8.32755557413569 | 5.31279996605123e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.68962170875666 | 0.0131526788195146 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.66153954360346 | 0.000146426305486952 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.43443361097508 | 0.00734897348677433 |