Chr:
Chr4
Start:
648985
End:
649687
Strand:
+
Ref_name:
LOC112938756
Sequence
(XR_003242041.1):
AACAACAACAACUUAUUCCAAAAAUCUCUUGUCCAUUGAACUUACUAGUGGUGCUCUACACUGCUAUGGUGAUGGUCCCCAAACAGGCUAGGAUGCUUGCACAAAAAAUUUCUCACAACUAAAAGAUAGUACCCUUAAUUAAAUGCAGAUAAACAGAGAUGAAAUGGAACAAAAUUCACCAAGAAAAGAGGGGGGAGAGGAGGAGAAGAAGGUCACCUGCGUAGGAUGGCGAGGACGGCGCCGUCGGGGCCAUGGAGCGCGACGUCCGGGCUGGACCCGAUCUCCUCCUUCUCCCGGUCGCCGAUGGCGAGGACGAUGGGGAGCGACAUGUUGACGACGCCCGCGCCGUCGGGGAGGCGGAUGCAGUUGAAGUGCAGCGACUGGAGGUACUCGUGCUCCCGCAUGAACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.74%
ME_num:
MEP:
36.38%
HE_num:
HEP:
4.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
2.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.41361064683392 | 0.0314677766393099 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.19880145587296 | 0.0486375981272957 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.11019164129294 | 0.00990573824378122 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.3945004083231 | 0.00772523836140857 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.40029888873885 | 9.59926443612105e-07 |