Chr:
Chr1
Start:
11609876
End:
11611632
Strand:
-
Ref_name:
LOC112938747
Sequence
(XR_003242019.1):
UCACACCUGCAGAUAAGUGCAUUUUCACUUUUUCAGAAUGCUAAAAUUUCAGAAUUUUCAGAUAGGUACUCCCCCGUCCUGGAAAAAAUAAUCAAAUCCUAGCCAUGAAUCCGAACAAAUAUAUGUUCAGAUAUAUAGUCAGGAUUUAAUAUUUUUUAAAAUGGAGGGUGUAUGAGGCUGAGCUAGAUGGAUUUGUCUGAAGAAAAGAGGAGAAUUAAUUCUGUACCAUCAAUGGCACGCAGAGUCUUCCUGAUCUUGUGCUCGCAGCCAUUGCAGUCCAUCCUCACAUGAAGCUCUGUUAUUCGCGGCGUCUGCAGGUACAGUUCGAGUCACAGUCACCGACCUCUGAUUCUGCAGCCAUCACUGAAGUUGAUCUGAAUGUGUAUGUUUUGUUGGAGAUAGCUUCCUGAAGCUCGAGGAUCCUAAUGGAGAGAGCUCCUAAUUAAGACCUUUGUUGCUAGGCAGCUUGGAGCCAUGGACCAUGCAAGUAGUUGCACUUAUAUAAGGGAUUGGAGAGAUGGAAUAUUUAGAGGGGAAUUUGUGUGGGUCACCCAAAGAAUCAUUGGAAAGUGAAAAGAGGGGCCCUGUGUGUUACUCCAUCCCGGCAUGACCUCCUCUGCUUUUCCUUAUGUUGUAGUCGUACCCGCAAGUGGGUUCUUCUAGGCAAGGCAAGGUUUUCUCAGUUCUGGUGUCUCAUUUGCCCCAAGGUUUCUCGGCCCUGUUCUUUAGUGGUUUUCAGAAUUAAAUAGGCCAUUUCUCUUUUGUUAUUAAGAUACAUAAUUUUAUCUUGGUUUCUAUUAAUAUGUUUUUAACUGCUAAAUGGUGUAUUUUGUGUGAAACUUUUUAUAUAGAAAUUGUUCUAAAAUAUCAAAUAAAUCUAUUUUCUCAAGUUUGAAAUCAUUAAAUCUCAAUUAACCAUGUAUUAAUGUAUUUCUCGUUUUGCGUGCUCAUACUUAAUCUUUAUUUGGAGCAAGUUCAAACAGGGCCAUAGUUCAUACUCUCACAUAGAUUCCAAUAGUAUAUAGUAACAAAAUCUAAAAAGCGAACUUAAAAACCAGAAGCUCUUUCAUAAUAAAUCUCUAGCUCCGACAAAUAGUUUCAGAUUCUCACACAGAUUUUAAUAAUAUGUACUUAUAAAAUCUAUAAAAUAAACGAGAAAUAGAAAAGUUAGAAAAGUCUAUUUUUUCUCAGAUUCUCAUCAGUCGUUUCUCAGAAUCUAAUAAAAUCUAGAACUGAUGUCAGCCGGGGAACAUUUCAGUUAUAUCGUUUUCUACAUAUGAACAUCAUCAACAGUACGUAGAUGCAAUUAUUGCCAUGGGAUAACCAGGAAUCCCUGCUUUCAAUCGAUUUCCAUGGGACUCGAUAUACUACUGGAUUAUGUUUCGUUUUGGUAUUUCCGAAUGCAUAUGGUGCUAUAUAUGUGGUCUUUGUCGGAAUGUUAAGUUUAGGCCAAAACAUUGUGCGAGUCAGUGAGAAUCAUCAAUAACUCACAGUAGGGAGAGUGGGCAUUGUAGCAGUUAUUUGGGCUUUUUGGAAGAACAGAAAUGCCGCAUGUGUUAACAUUUUUUUUCCCAAAAGAUCCUAUAUAAAGCUGAUGAGGAGGAAGAAAGCUUUUUGGUUGAACAAAUGGAAAUACCACUUUACGGUUUUUGUGGUAAAUUUAUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
49.59%
HE_num:
HEP:
24.39%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.77
Avg Expression:
7.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.16843282658211 | 0.0157241842515106 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.19210848087582 | 0.0123409917985833 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.16564732217767 | 2.78584474274629e-11 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.47786364010986 | 0.000518568745422425 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.0693711248515 | 0.00435815889184779 |
| 6 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.08340867308095 | 0.0148205659792024 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.50559167095542 | 0.000202114046199388 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.18783784923048 | 0.000191764065478029 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.27045838841818 | 0.00219977827424523 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.68683629108892 | 0.00864615104321662 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.35846853997535 | 9.08791701795292e-05 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.68692853223393 | 0.0088380254229375 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.68700714467172 | 0.00866941400938329 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.50612827995683 | 7.92417429646639e-09 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.91886913159132 | 2.04304618692608e-05 |