RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112938710

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

10940633

End:

10943978

Strand:

-

Ref_name:

LOC112938710

Sequence
(XR_003241959.1):

CCGCUUCCCUGUCGCCGCCACCGCUGCUCGCACCGCUGCUCCCAGGACGAACUGACCUAGGCGGCAUCUAGGCCAUACCAACCAACGUCGGCCAUCCUCCCCAACCAUGAUGAGGGUAAAUAGGAGGCGACGAGGCUAUCCCAGCGUCUAUCAACAUCGCUGAUCCUGAAUCUCCUACGACAUCGAUGGUGACCUACCAAUUUAUUCCUUUUCCUUGAUUUUUUGAAGCCAAUUUCGGAAUUUGGCAUGGAAAUAAUACGGAUUUGUGUGCUCCCUUUUUGUUUUGUUGUUUCAUCCUGAUCCCGAACAUAAUCUAGACAUCAAGUUCAAUGAUAUUCUACAAGUUACAAUUUUGUCAAUUUUUAGUUGCAAUUUAGUAAAAAUUAAUUACAGAUUUCUGUGAUGUGAUAUAGCAUGUUAAAUCUGGAUCACUGGGCACACCUCAAUAUGAUGCUUCUUCUGAAGCCCAAGAGCGAGUGUCAAUCUGUCACCAACCAAUUUUGGCCGUCCUUUUCUUUCUUCUGGAUUGCAAUUUCAGUUGUUGUUUAGUUAGCACAACACAAUUAAUGUGCAUCCAAGUUGUGAUGCUUGCCAAAAAGAAAAUGGUAUUGCCGCUCCGCUGAUAGUUCAUAAUGGCGCUGUUUGGUGUUUGCGUGGCCUGAAAUGGUUGAUCUUUCAUAUCAGGUCAAACGAGAACACCACGAAUGCUUUGCAACAGAUUCUGCCAGAGAAUGGAGGAUGAUGUGCACUCCACCACAUCGAGUACUAAUACUCCCUGAGAAGUGGCUCAACACUAGAAUGCUACUGCCACUGGUUUUAGUUUCAGGUUGCAGGAGCGUGCUGAGAAGAGGAAGAAGUUCUACCAAAAAUCUGAAGAGAAGAUCCAUGCAAAGGAGCUUGAACAAACGCAGGCAAAAUCUAAAGGGGAGGAAAACAACCCAGCGACGUGGAAGUCCGUGUCUGAGGAGUGCGCCGGCUACAUGCGGGAGUUCCUCACCGACCUGGCCUACUGUUCCAACGUUGAGGUCGUUGCACGGGAGGCGACCGCCUAGCACGGGCUACGAGUGACGGCGCAGCAUGCGGAUGUUCGAUGUCAAUGAGAUGCUGCUCUCCAACCUCCCCUACUACGCCGACCACAGAUACAGAUCUAAGGUUCUACAGCUUAACACAUCCAAUGGGCUGCAUAUAUUCGAAAUAUAUAAAUUACUCUAUUUCUGAGUUGCAGAGAAAGAAAAGGAGAAUUCUCAUGAGUCAUGUCUCAACAAUUAUCAGAUCAUGGAAUAAAAGAAUAGGAGGGGCGCCGAUUCCCUCCACCCGCUCUGCCCUCCCCACUCUGCAGAGAAGGGCACGGGCGACGAUGGCAUGCUCUGCGCAGAGUGCUCAGGGGAGAGGGCGCGAGCGACGACGGCAUGCUCUGCGCAGAGUGCUCAGGGAAGGACGUCGCAUCGGCAAUGGUGCAGAGGUAGGAUGUGUUGAUCGCAGCGCAGUUGGGGAUUUUUGACGUGUCUUCAGGCUGUUCUCGAUGAGCUGUUAAUUAAAUGAAAUGUCAAGUGAUUUUCUUGAACUUGAUCAGACAAAGAAACUAUAUUAGGGAAAUAUUCAUGACCUGUUAGUCUGAAGCGGAAGUAGAAUCAGAUUUAGCAAAUGCAGAUGUAGAAUCAGAUUUUAGCAAAUGCAGAUGUAGAACUAUCCAAGCAGAUUGAUCGGGCACAAUCUUACUGUGCCAUUGCCAGUCAUCUAUUCAAGCACAGAGCAAAUUUAACUCAAGAUUGUGAGAUGAUGCAUGUACAACUGAAUAAAGAUACAACCUUUUCUCUGCUCUA

Sequence
(XR_003241960.1):

GCCGCUUCCCUGUCGCCGCCACCGCUGCUCGCACCGCUGCUCCCAGGACGAACUGACCUAGGCGGCAUCUAGGCCAUACCAACCAACGUCGGCCAUCCUCCCCAACCAUGAUGAGGGUAAAUAGGAGGCGACGAGGCUAUCCCAGCGUCUAUCAACAUCGCUGAUCCUGAAUCUCCUACGACAUCGAUGGUGACCUACCAAUUUAUUCCUUUUCCUUGAUUUUUUGAAGCCAAUUUCGGAAUUUGGCAUGGAAAUAAUACGGAUUUGUGUGCUCCCUUUUUGUUUUGUUGUUUCAUCCUGAUCCCGAACAUAAUCUAGACAUCAAGUUCAAUGAUAUUCUACAAGUUACAAUUUUGUCAAUUUUUAGUUGCAAUUUAGUAAAAAUUAAUUACAGAUUUCUGUGAUGUGAUAUAGCAUGUUAAAUCUGGAUCACUGGGCACACCUCAAUAUGAUGCUUCUUCUGAAGCCCAAGAGCGAGUGUCAAUCUGUCACCAACCAAUUUUGGCCGUCCUUUUCUUUCUUCUGGAUUGCAAUUUCAGUUGUUGUUUAGUUAGCACAACACAAUUAAUGUGCAUCCAAGUUGUGAUGCUUGCCAAAAAGAAAAUGGUAUUGCCGCUCCGCUGAUAGUUCAUAAUGGCGCUGUUUGGUGUUUGCGUGGCCUGAAAUGGUUGAUCUUUCAUAUCAGGUCAAACGAGAACACCACGAAUGCUUUGCAACAGAUUCUGCCAGAGAAUGGAGGAUGAUGUGCACUCCACCACAUCGAGUACUAAUACUCCCUGAGAAGUGGCUCAACACUAGAAUGCUACUGCCACUGGUUUUAGUUUCAGGUUGCAGGAGCGUGCUGAGAAGAGGAAGAAGUUCUACCAAAAAUCUGAAGAGAAGAUCCAUGCAAAGGAGCUUGAACAAACGCAGGCAAAAUCUAAAGGGGAGGAAAACAACCCAGCGACGUGGAAGUCCGUGUCUGAGGAGUGCGCCGGCUACAUGCGGGAGUUCCUCACCGACCUGGCCUACUGUUCCAACGUUGAGGUCGUUGCACGGGAGGCGACCGCCUAGCACGGGCUACGAGUGACGGCGCAGCAUGCGGAUGUUCGAUGUCAAUGAGAUGCUGCUCUCCAACCUCCCCUACUACGCCGACCACAGAUACAGAUCUAAGGUUCUACAGCUUAACACAUCCAAUGGGCUGCAUAUAUUCGAAAUAUAUAAAUUACUCUAUUUCUGAGUUGCAGAGAAAGAAAAGGAGAAUUCUCAUGAGUCAUGUCUCAACAAUUAUCAGAUCAUGGAAUAAAAGAAUAGGAGGGGCGCCGAUUCCCUCCACCCGCUCUGCCCUCCCCACUCUGCAGAGAAGGGCACGGGCGACGAUGGCAUGCUCUGCGCAGAGUGCUCAGGGGAGAGGGCGCGAGCGACGACGGCAUGCUCUGCGCAGAGUGCUCAGGGAAGGACGUCGCAUCGGCAAUGGUGCAGAGUUGGGGAUUUUUGACGUGUCUUCAGGCUGUUCUCGAUGAGCUGUUAAUUAAAUGAAAUGUCAAGUGAUUUUCUUGAACUUGAUCAGACAAAGAAACUAUAUUAGGGAAAUAUUCAUGACCUGUUAGUCUGAAGCGGAAGUAGAAUCAGAUUUAGCAAAUGCAGAUGUAGAAUCAGAUUUUAGCAAAUGCAGAUGUAGAACUAUCCAAGCAGAUUGAUCGGGCACAAUCUUACUGUGCCAUUGCCAGUCAUCUAUUCAAGCACAGAGCAAAUUUAACUCAAGAUUGUGAGAUGAUGCAUGUACAACUGAAUAAAGAUACAACCUUUUCUCUGCUCUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

20

LEP:

4.07%

ME_num:

356

MEP:

72.36%

HE_num:

115

HEP:

23.37%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.72

Avg Expression:

12.28

Tip: OSA-LNC112938710 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.282654747021890.00634019143889271
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.19845089796380.00835469744192431
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.30589536342620.00212182968538073
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.113193609759280.0297698410990312
5Azucena // root // control--/--Azucena // root // Al1.629508655848010.0395137611984626
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279-1.306296352288620.0201691621958719
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.243113206282660.00385945860674341
8Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-1.315801311531160.0148868512969753
9Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.458809698904170.00327314474335925
10Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-1.251723974107950.0198973252521091
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331-1.551346556637620.0339784614322097
12Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"-3.427300139685390.0453154773647388
13Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-1.606094751270190.00488426819180948
14Nipponbare // leaf // control--/--Nipponbare // leaf // drought-3.427449874956030.0456272245390476
15Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"-3.427422649744220.045400531306657
16Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-3.958242601513734.82356835107254e-07