Chr:
Chr4
Start:
128896
End:
129822
Strand:
+
Ref_name:
LOC112938709
Sequence
(XR_003241958.1):
CACGAUUUGUAAAAAUAGGAAGGACGCUAUCCAUCUUAGUGUCCAGGCGUGGACGCUCUCGUAAAUAGCGUCCACCUAGGGACGUGGUGGUGCACAGCGUCCAGGCUGUUACAGCCCAUCGUAUUCGUGGCCCAUUCAUGAUUCAUCUCCUCAUCCAUGGGAAAAAGAAAAAUGCACAAAACCUACCCAUCUGCCGCAAUCCUCUUCCAUUCUUCCUCCGAGCGAGAGGAGGCACCGUCGGCCACCGCUGCCCUUCUCCUCCAUAUGUGGGAGGCGUGUCCAUCGUGAAUCUUGGGAGGCUACAGCCGCCGUCUGCCUCCAUCCUGGAAGGCCGUCGCCGCGGUCCACUAGUCUUCCCCGGGCUUCCGCUGAUACCAUACCCUGCAUGUAUGAUCCUGACAUAAUUGGUGGAAUUUAUCAAGGAAAAUAUGGAGCGCAUGGCCUGUUUCCAGAAUGAAUUUCAGAUUGAUCCUUCUAUGAGAUAUCCAGCAUAUGUGAUUGUUGUGGCUUUGUUGCAUAAAGACAGCAAGGGUGUCUGCUACUGCUAUAGGGCCAUAGGGGGCUUACAAAACUAAGGAUAAUGGCUUUGGAGGUGUUCAGCUCUUCACAUGGACGGAAUAUAAGUGUUUGUCGUCUCAACAUGUAGUUGCAUGUUCCUGUUAGGCUCUUUGUUUGGAUAGGGAAGAGUGUUUAAAACUGAAGCGCAGACAGUAGAACAUGUUCAUGUAAGUGCAGUGAUGUAAGCUGCCAUGAUGUAAUUAUAUAUAAGUGGGAUUUGCCUCUUCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.71%
ME_num:
MEP:
40.85%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
7.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.45676312504321 | 0.0252393099605762 |
| 2 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.27731080380806 | 0.0446354063651679 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.74400555831008 | 0.0275107311626484 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.81760844738139 | 0.0284503105125585 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.27402627265489 | 0.002973012362251 |