Chr:
Chr4
Start:
30593978
End:
30595676
Strand:
+
Ref_name:
LOC112938652
Sequence
(XR_003241825.1):
UCGUUUACUACUUCUUUCUAUCCUGGAUAAAAGAUUGCAAAGAGGCCUGGCUUUUUUUUAUUAUUGUCCUUCCCAGUCCGCAGUCCCCACUCUCGAGUCUGGACUCCUCCGCUGCUCUCCACUCAUCAAUCUACUCCUCGCUCGACCUCGGUGUCUCCGUCUUUGCCGCGGUGCCGCCGUGUCGCUGCUACAACGGCCUUCAGUCUAUGGCCUUCUUCGCAGGAAGCUCGAAGGCGCCUGCAUCUGCAAGAUUGAAGUUGCGCCGGCAACAUGAUCAGCAAAGAGAAGUCUGCGAUGCGCUCCCUGUCCCCCACCUCCUGCAAUCCCUCCUGCUUCUCGGGCCAGCGGCCGGAUCCGCAGCCCACGAUACCUUCGCCCGCCGCAUCCGGAAGACAACUCCCAUAUUCCCAAGCCGAUGUGAUUAUCGGCGCAAAAAUCUGGUAGUGAGCUUUGGUGCUGGACAAAGCACCAGUGAGUGUGAGUUGUGCGAUACAGCUAGCGUUGCUUGCGUCCAUUCACUUGCUCUCUGCCUCUUUUGCUCAUUUGCAUCACCAUCCAGUAUGUAUAGGCUCGGUGAUUUUGGUACUCACCUGCAGGCAGGCAUGCAUGCAUCCUACUUGGGUAAUUUUAACCAGUUCUUUGGUGUUCUAAAUGGAAGGAGUAUAAAUAAAGGACACGAGCGGGUGGUUCGCCGCGGCGUCAUCGGCCGUGACGCGCAGGUGGCGGAGGAUCCGGCACGGCGCCACCGCUCACUCGCACACGCCGCCUCCUCUCCUCCUCCGCUAGCUAGCGCCCCUCCCUUCUCCUGAUCCAGGCCGAUGGCCAGUGCCGUCCCUCUUCUUUCUCCCCGGGUUCAAUGGAUCUGGCAAGUCUGUAUUGGGACGGGCGUUCUCGAGGGUGACUCCUGCCGGUGAGAUAGAAGCGUUGAGGAAGGGCAGCAGCAUGGCCGGCGGGGAGCACAGGGGAGGGCGAGGUGGCCGGGUGAAUGUGAAGAAGACGAGCCCAACGCCGUUGAGGGAGAACAUCAGAACAUGAAGCGGGUGGUCGGCCGCAACGCGCGGGUGGCGGAGGAGCCGGUGGAUUAGGGUCGAGCAAUUCUGCAAAUAAAAAAUACAGUAACUCCGUAGUUUUACGAUGAGGUCCACCGCAACGAACUUUAGCCGUCGAUACUUAAUCAAACGGUGCAGGAGGAGUGCCAAGGAGACACGUGGCAGAUUUCUAGAGAGGUGAAGCUUGAUUUCCAGAGUGCCACGUGGCCAAAUCAAGCGCCAGGUUUCGGACCCUGCAAUCGAUAUAUAAUAUUUGCCGGAGCCGCAACAGCGAGGCCAUGAGGCCCAUGACGCGACUGGAAAUACUCCAGGACAGCUCGCCGGCUGCUGCUCUGCAGUGCUAUAUACUCUCAGGCUGUGUUUGGAUAAUGGAAAAUAGGGGGUGGGAUUGGGAUUGGGAAAUGAAUGAAGGGUUAGGAUUAAAUGAAAGAGGGAGAAUGAAUGGUUAGGAUUUAAAGAUGUCUUUUUGUGGGUGGGAAAUUAUUUCCAUUUCCCAUUAGCCAAACAUUGUCUCAAUCUGUUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.59%
ME_num:
MEP:
9.76%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
4.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -8.09000064529532 | 3.27265912389062e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.88812132901038 | 1.13498654878995e-28 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.38382218104664 | 5.30309937658771e-29 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.9506417049994 | 8.03707004395154e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.75612275304961 | 1.10455972001911e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.92368334571082 | 7.05417968656887e-15 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.87177794057771 | 4.61380011840597e-35 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.99316721832765 | 5.78404837332649e-20 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.46968575254576 | 7.01696942204252e-41 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.46844552485923 | 0.0039705406302435 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.46835184545355 | 0.00400675544812964 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.4682496969288 | 0.00398251047762429 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.30187941043214 | 0.000893520680342972 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.01413698940975 | 3.66385330369016e-27 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.3641143406848 | 2.35241971397939e-05 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.714155451851 | 2.38040229926201e-30 |