Chr:
Chr4
Start:
16435928
End:
16436752
Strand:
+
Ref_name:
LOC112938643
Sequence
(XR_003241815.1):
AAAAUUCGAUUCAAAGUUUUUCAUUGGAUUAAAGAAGGUGGGUCCCAACUGUAAGUGUCCUCCUCUUCCUUUUCUUUCCCUUCUUCUCUUCCUCUUUCUCUCUCUUUCUUAUCUCCUUCUCUGCUCUCUUCUCCCCUUUCUUCUCGAUUCUCCAUGCCAGAGGGGAAGGGGCGGGCAUGGCACACGGCGGGGUGGCGGCCUGGCAAGGGGCGCGGCGGCAGGGUGGCGGCCUAGCACGGCGGGGUGCCGGCCUGGCGCGGCGGGAGUGGCACAACGCGGCGGGCGAGACGGCCGGCGCCCUCCCCCUCCCAGAUCCAGCGGCGGCGGGCUAGGGAGGGGCCGGUCGUGGCCGGGAGCGGCAGCGGCGGCGGGCGGGAGCUGCGCGGCGCGGCGUGAGCGGCAUGGCAGCGGCGGGGGAUCUCCGGAGGCUCUGACAACAACGAUGGGAGGGGCGGCUCUGGUGGCGGCGGCGGCGAGCAAUGGCGACGGCGACAACGAGGACAAGGACGGCUGUUGAGGCUUCGAGCGACGUCGACAGCGACGAGGAUGGCGUCGCCGGCGUCCGGAUAGUUUCCAACCGCAACCGAAUCCGAGUUCUGACGGAUACCAUCGCUACUGUAUUCGAAUCCGUUUCCAAGAAAAACUAUCCGAAUUCGUAUCCGAAUCCGAAAAUAUCCGAAAAAAAUCCGACCGAAGCGAUCCGUAUCCGAAAACACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.98%
ME_num:
MEP:
44.31%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.76
Avg Expression:
4.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.48758816378486 | 1.86329417187358e-11 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.84196504715756 | 0.00442735801780198 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.68780409722816 | 0.000467679658662378 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.00744023690955 | 0.000517970532626437 |