Chr:
Chr4
Start:
23592024
End:
23593725
Strand:
+
Ref_name:
LOC112938640
Sequence
(XR_003241814.1):
GCUAGCCGCGCAAUUGCGCGGGCUAACCAGCUAGUUUGAUAUCAUCAUCUUCUUAAGAAAUAUAAUAUAUACAUAUACUCUCUCCGUUCAAAAAAAUAAAUAAAUCUAAUACUGUAUAUGACAUAUUCAUAUUAGGCAAAAUUUGCUACAGAACACUGAAAGAUUAUGGUCUUUGCUGUGAGGCACUUGAAGAUCGCGUAUCUUCUCGUGGACACCGUAAAAAAGUAGUAAUUAGCUGCUAGACACUCCUCCCAUUAUUUUAUUAUUUUCGGCCCAAACGGAGAGAGAAACUUUCAUAAAAGACAAGUUUGCCCACGGGUCCACUCGUCAGUCUCCUCUCUUUCUCUAUUCUCUUCUUCCUCAGCAGCGAGUGAUGGCAGAGGUGCCGAGCAGCCACGGCGAGGCCACCCGUCGGACAGCGUUCGGGAGAAGGUGCCGGCGGCGGAGAGGAGUGGUGUGUCUGUGGCACACGCUGGCGGAGGAGGUGGAGACGAGUCCGUCCACAACGGCAUAGAGAUUGGCCGCCGGGAGUGAGGCCCUGCACUCCAGACAAUCCCCGGGAAUGCCGGUGGUAGAGGAGGUCGAUAGAUGUUGUGUGGAUGUGGAGGAUGGCGCGGCGGUGGAGGGGGUGGCGUGGCAGACGUGCUCCAAGGGUCCAAGUGGAGUCCUUCAGAUCGGCGCAGGCGAGGCAGGGGCUGGCCGACACAACAAAGGGGAAGGACGACGACGAGGUCGACCAUGGCGAAGACGGGCACCCCAGUCUCCAGGGCCGCGACUAAAGUAGGUGGGCGGAGGCGGUGGGGGCAGUCAGCGGCCUCCAUCUGGGAGAAGAAGACGGCGACCGGCUCGUGACGCAGUGUGGAGGACGAAGUCGACGAUGAGAGCUUGGACAAAGCCGUUUUCAUCGCCGCCGGCCGAUCUCCUCCUCCAUUGCUCCCCUUCCUAUUCCCUUUCACCACAGGCUUUGCCUCACCGAGGAGAGACCCUUUUUCCCCUUUCCCCUCUCCCUCCACCUCUGAGUCAGGCCACCACCGCCACCACCAUAGCCGGCCAGAACUAAGCUCUUUGUGUUGCCGUUCCGGCCAUCUCCUUUUUCCUCUUUGCUUGACACCACCCUCCCCGGAUGCGCAUCGCCCGGGAACAUCAUCCGUCACCAACGUCGUCGAUCCCCGGCCACUGGAGCACCGACGCCCUUCUCUCUCCCUCUCCUCUGUUACUCGGCUGGAAGGAGGAAGAAGAACAUUGUCAGGGGCAUUUUGUGUCCACGAGAAGAUGCGCGAUCUUCGGGUGUCUCACAGCAAAGACCACAAUCUUUCAUUGUCCUGUAGCAAAUUUUGCCUUCAUAUUAUAGUACAAUGAAUUUGAAAAGAGAUAUGUCCACAUCCAGUACUAGAUUGUUUUUUUAUGGGACGAAUGGAGUAUAUAAUACUAUGAAUCUGAAUAUAUGCAUAGUUAUUCGUGAUGCAAAGAAGAGGGAAAUAGUUCUAUCCCGUCCUAUACGGCUACAUCGUAUAUAAUGACAUAUUGGGAUGCACUUGACCACAUAUUUAUUCUUCGGCCUUAUUAUAUUUAAGUUUUCAAGUGGAAAUAUGUAUAUUUACAAUAUAUAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
44.31%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.72
Avg Expression:
2.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.2316819171319 | 0.00813216406536184 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.44703763947899 | 3.90889373740018e-06 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.27616060876251 | 5.27658657083e-11 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.36114535480592 | 0.0355889943769804 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.40342257136399 | 0.00187913224741658 |