Chr:
Chr4
Start:
25805826
End:
25808700
Strand:
+
Ref_name:
LOC112938619
Sequence
(XR_003241789.1):
AUCUCUCUUUUCCUUCAGACGGCGACGGCAGAGGUAGCGAGCGUGGCGAGGUGGCGGCGGCGGCGAGGCGAGACAGCGGCGGAGGAGGCGAGGGGGCGGAGAGGCGAACGCGGCGGCGAGGCGAGUGGUGGGGGCGGAGGAGGCGAGGCGUAGAAGUCCAGCGACAGCUCGUGCCACACCGGCGGGCGCCUAUUUCAUCUGCCGGCAGCAGCGCCCACGCCCGCGCCACCCCGCCCUCCUUCCGCCGCUGCCACCACCUCCUCUUCCUCAGAAGGAGAGCUGAUCGAUGCUCUCGCGGUCUCUCCUCCCAGAGCUCUUGAGAAUCAUGGAUGAUUCCAUGGAUUCUAGUCGUCCUCGCCGACGGUGGCAGUCCGACGGACUAGCUAGGCCAGGAUAAUUCAGGAUGGUGCCAGGUUAACGGGGCUUACAGGGGGUCGAAUUUGCCGUCGAUUCAGUUUGAUACUUGUCGGAUCUUGAGCUAUCUCUGGUAGUUUCUUGCAAACAUCACAAGUUCAGGAAAGGAAUUGAGAUCGGAGGCUCGCUUAUAUCAGUCACUUUUAACGUGGUGGCAAGUUUGGGGACAAUGGAUGCGACUGUCUUGAUCAAUGCGUCGGGGUCCUGCAUCCACGGCCAGGUUCUUCCUCUAAUCCUCUCCUCGUACCACUUGCCAUGGCCUCUGCGAGAUCAGCAACGGCCUGGUCGAGGCGGCGAUGAAACGCGGGCGCGAUUUUGGCGUGCUUCGCGAGGGCAUCCCCUCGCUCCCAUGGCUCGACGGAGCGCGGAGCGGCGGAUGAGUGACGACAUCCAGCCACGCCGGCAGCGGCUGCGCCUCCCGAGCGCGGCAAGUCGGCGCCACAGCGGCCGCUAGCAGGAAGCCGAGCAGCAGGAGUAGCCGCCAUCCGCGCGCGGGGCGUGGACAUGGGGGUCAUCGCCGCCGACGGGGAGCAGCGUGGGCGGGCAGGAGAGCAAGGCGGCGCAGUGGCGCCCGUCGAAGGUGCGCCCGUGGAGCACGGCGGCGACCGACGCGGCCGCUUCGGGGCGGAGGAAGUCGGCGCGGCAGAAGCCGCGGCCAUGGCAGAGAGGCGGGCGGCGGUGCUCGCCGUCGUGGCGCCAGCCGCCGCCACGGGCGAGGUCCGCCUGGACCACCGCCACAGCGGCCUCACACUGCCGUCCGGUUCCCCCUCCUCUUCUCACGCCGCGCGCCGCCGUGCAUCCUCCGCCGACGAGAGAGAGAUUAGGAAGAGAGAAACAGGGGGUAUGACAUGUGGGUCCCACCAUUUAAAAAAUAAAAUGCUGACUACACUGCCACGCGUACGCCACGUAGAUCAAAACCACCGCGGAUUGGAUCGAGGGGGGUAAUUCGUCCGGUUUGCAUAGUUGAGGGUGAAGAAUAUCCGGUUUUGUGGUUCAGGGGUAAUUCGGACGACCAUGAUAAUUUUGGGGGGAGUAAUUCGUACUUUUUCCUUUCUUAUAUUGUGCUAACAUUAUAACAUUUUUUAUUGGACUACUCGGUCUAAUAAAACCAUUUUUCACAUAUACUUGUAUUCAAUUAACUGCCAGCUCGAUACUCUUGCAAAUAGCUAAUUAAGAAUUUAAUGUGUUGAUUAAUAUAAUAUAGCUUUAACUAUAUGUUGUCAAUUCAUUAAAUAAAGUUGUUAAUCAUUUGACCGUCAUGUCUUUGUCGUAUCAAACUAAUUGAUCGAUGGAAUCGGUUAAAACUGCUUAUCUUUAUUCCUAUACAUUGUUAUAUCUAGGGUUUUCUAUUUCGGUAAGUGAACGUGGAUCAAAUUAAAACCUUAGCUUAGAAAGGAAUGCAUACAUAUAUUUAGACGCUUAGGGUGCGUGCACCAAAUUAGCUCUCUCUUCCCAUAGGUUUUGAAAGCAACAAUUAUAUGCCACACAUUAUAUGGUGAAAAGGUAGCUAGCCGCACAAGAUAAACAGCGAACCUACUAGUUAGGCUAGCUUUAUGGGGGGUGAUUAUUACAUUGUGAGAUUGGCUAAGAAAUAUCAAGUCUGUCAUCUCCCGCUGCAUGCCGCGUGCGUUCCUGUUAAUCUUUUCACUUUGGCUACAUGCUUUAAUUUCUAGUACUGUUUUAAUUUUAUAGAAUACAAUUUAAGUUUCCUUUCUGAUCGAUCAGGAUCAAAUCGAUUUUUUUUUUCAGAUUUUUCUCUAUUACCUCCAGAUCUACGCCGCCCUGCUUCCCCUCCUCGAUGAAGCGUCGGAUCCGCGAUUUCUCCUUCCCGUUGUCGGCGCAGCGCCACAGGAUACGGAGGGACCCAUCUCUGCCGGCUCAUCCUCCGCCUAGCCCCCCCCCCCCCACAGGUCUCGUGGCCGCCUACGCCCACCACAACACCGGGAGCCAGAGUCCUGCCUCCACCAGCGCCGUCGCCGCCGCCACCGACUGAUGUUCAUCGCAAGGAAGAAGACACGAGAAGAAGGAAGAAGACGGAAAAAGGAAUCAGAUGGAUGGAAAAUAUGACGGCGGUGGCACGGUUCUAAUUUUGUAAAAUUUUAAUGACAUAACUACGAAUAGAUGAAUUGUUGACAUUUUUUAGAAUGGGUAAAUUUACAAUGGCAUGGAUUCAAUUAACCCUAGAAAAUACUAAUCCUUGCUAGUUUUUGAAUCGGUAGUCUGCACGUGGUGGUGAUGGGGCACAUCACUACCGGUUUUCAAACUAGCCAAGAUGAAAAUAUCCCUGGCGGUUUGUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.02%
ME_num:
MEP:
48.37%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.79
Avg Expression:
2.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.73054254806921 | 0.00352670602124736 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.04868623664014 | 0.0012153611394389 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.10634559931953 | 0.000545626616623206 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.94009700217601 | 3.39327762964979e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.86445788423485 | 3.13055651294212e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.4211124236842 | 0.000297567424967607 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.42793426731678 | 0.0077215232334224 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.90279574948209 | 0.0425855676728527 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.60454884994526 | 0.0169100748750916 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.29885684608663 | 0.0432963987762731 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.68109046599005 | 2.9719161124878e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.52053786087766 | 5.66308464373828e-05 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.08697355768092 | 8.60435383810945e-09 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.27496934394724 | 0.000117544087164991 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.44350394605578 | 0.0317671146481379 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.09858523966701 | 0.0298624236171086 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.88086208099267 | 0.0271984759236267 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.9690076169954 | 0.00107117045262918 |