Chr:
Chr4
Start:
24327063
End:
24327527
Strand:
+
Ref_name:
LOC112938617
Sequence
(XR_003241787.1):
CUCCCCCUCCCUAUCCCCGCCUCCUUCUCCGCCCUCUCGAACACCCCCUUCCAUAUCCUCGCCUCCCUGCAUUAAAAAAAAAAGUUACAUACAUCGAUCAGUUCAACCCAAAAACGUAUGUUGGUGAUAAAAAUCAGUGCGCCAUGGAUGGAUGUGUUUGUGCGUGCUUACCUAGAGUGCUCCAUCUUGGGGAGGUAGAAGAAGGGGCCGAAGUCGGCGCCCUGGCCGGAGCGGAAGGCGGCGUGGCUGUGGAAGAAGUAGAGGCCGAAGUCGACGAGGCAGCCGAUGGCCGGCUCGCCGUCGACGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.8%
ME_num:
MEP:
39.02%
HE_num:
HEP:
10.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.91
Avg Expression:
9.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.23715426528935 | 0.000474965738829766 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 6.85344135049894 | 9.55547697217861e-10 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 5.07125167242608 | 0.00264050890016163 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 6.09423122738035 | 2.15915635035227e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.18621032075098 | 0.0480072726898689 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 6.28377326245472 | 1.22139007226657e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 5.85768545336985 | 3.02517597500281e-07 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 5.00156976227244 | 0.000169967525714667 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 5.39356383164149 | 0.000106354411699429 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 5.31815792870169 | 0.000792336404857522 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.21574852073821 | 0.0421516765886889 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 5.34810420593912 | 1.37529584089873e-05 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.21567619508295 | 0.0424767295171709 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.21555055353597 | 0.0422723573441072 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.54342362940489 | 0.00106724853879129 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 6.18740025348952 | 4.13377144945432e-22 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.85035303112941 | 0.000167245022493073 |