Chr:
Chr4
Start:
14251378
End:
14252640
Strand:
-
Ref_name:
LOC112938610
Sequence
(XR_003241778.1):
CCGGUCGCCGUCGCCAUUGUCGAUUCCGCCUCCUCCGUUCUUGGAGCUGAUUGAGCCAUCGCCGUUCACCCGGAGGUUCUUGCCGCCGCCGAGCCGUUACAUGAGCCGCCGUCAUCAACCUAGCUACCCCAGCCAUGUCUAGCAUCUCGGUGAGCACCCUUCAGCCUAUAGAACAUACAUGCAUGCACCCAAUUAACCAAUACAUGAUUGUAGAAGCACAUGCAUCACCACCCGAAAACAUCCUCCUUUCGGACUCGCCGCCGGCGUUACUCCGAUGUCCACUGACCAAGAAAAGUAGAGGAAUGGAAUCGCAAUAUCAUGAUCUUCAUUUUGUCUUUUGGUCGCACCCCCAAACGAGCCAUCGUUUGUCGCCGGUGAGCUCGAGAUCGAGCUCAGCCAUGGCUGUUCUGCCUCUGUGCGUGAGAAAAGAAGUCAGGGACCUUGUUUCGAGAAUUUAAACAACUAUAAGGUUUAAUGUGCAACUUUUCAACUCACUGACAUAUGAGCCUAGGUCUGCGGGUUGAUUCUUAGAAACCGCAGGGAUCUUUUUGUAUAUUGAUCUCUCACUGACAGUGGACCCCUUGGAAACAAAAAUCUGAAAUUAUAAAAGAAAAGUACCUAAAACCUGUAAAAUCCAUAUAAAAUUAAAUAUAGCUCAUUUUAAGAUGAUUCAAAUUUCUGUGAACUCACCAAAUUGUGAACUUUGAUGUUAUGGAAUAAAAACUUGCACUCACAGUACAAAUUUAGCCUCUAAAAUUUAUCCAAGUUAAAUCACACAUAAAGCAUGCACAAAUUUAUAAAAUGCAUACAAAAUUCAUUUCAACUCAUUUUAGAGCAAACUUAGUUUCUACAGAUCCACCAACAUGUUCUCUAAAAAUAAAGUAAAAUAAAACAUAUAAACACUUUACAUCAAAUGCCUCUAAAACUAUUAUCUUUAAAAUAACUAGUUUUGCAUAAGAUGAACUUUAGAAGUUUAUAUAAAAUUCAUCUUAGAUCCUUUUUGAGUAAACCCAAGUUCUGUAGAAUCACCAAAACAUAUACUUCCAAGUUAUAAAAUAAAGUUAUAUACUUACUGUAUGAUAAAAGCCUCUAAAUUCUUAUGUAAGUAAUAACCAUCAUAGAGCAACCUUAAAUUGUAAAAUUUGUAGAAAAUUCAUCUUUAGUCUAAAUGAAGUGAACCAAAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.82%
ME_num:
MEP:
28.05%
HE_num:
HEP:
7.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.89
Avg Expression:
8.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.75087296762693 | 3.00142614622161e-26 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.67921878380145 | 1.0331072638877e-41 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -10.4386753140978 | 9.57086613629927e-18 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -9.43952822390464 | 2.86489990821239e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -7.24728966596153 | 1.70407163416371e-16 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -9.85408483589054 | 8.20152863988616e-16 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.52528133685849 | 1.95978390066653e-35 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.61065422380352 | 0.0145182996143448 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.83289725893643 | 0.00618489129089381 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -2.86613846595328 | 0.00494768114489031 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.36306779143043 | 0.0151589456892975 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.26442308929432 | 0.0161539872871909 |
| 13 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.44528919431901 | 0.00147058799055486 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -10.2518302504772 | 2.99577251431449e-17 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -10.7280845938985 | 1.15484195652806e-18 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.60453500319592 | 0.00164969480148339 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.59720352482723 | 2.04111419590377e-11 |
| 18 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -3.68808255207611 | 1.89802372420348e-06 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.70108534871654 | 2.7080142520314e-09 |
| 20 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -8.09755306849262 | 2.1362316808537e-26 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -7.30584178490351 | 2.11447252670625e-21 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.68409523370878 | 1.85691587816043e-17 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -9.01617836956991 | 1.21674710691434e-17 |