Chr:
Chr4
Start:
8812644
End:
8815202
Strand:
-
Ref_name:
LOC112938603
Sequence
(XR_003241764.1):
CCAUCAAACUCCCUAGUCUAGCCUUCUCCUCAUCCCAGCUGCAUCGCCACACCCCAUUAUCCAUUCCUAACCCGAAGAAACCGAGAAGGAGAGCUCCAUCUCCCUUAUCCAUCUCAACCUCACCGCCGACCGUGAAGACGACGACCGCCUCCAGCGCCAUUACGCCGCGGUCGUUUCCUCUUCUCUUGCGUCCCAUUAUCACCUCUCCACGCCGAUUCCAUCCCUCUAAGUUUCACCCCAUUUCAUGCAGUGGUUUGGUGGGAACGCAAACCUCGCCGGCGAUGCUCUGGAGCACGCACCGGGCGCCGCCGUGGCGGCAUCGUCGUCGUUGCCAUCGAUCUAGACUGAGCCGGAGCGAGCCACCACGCCACCAGCUUCACCUCGACCGCCUCUCCAUUUACCCCCAAGAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGAUCGACAUCGUCUUCUCCAACUCCGUUCAACUGCUUCCAUCAUCGAAUCCAUUCUCUCUGAUCGAGCAGCCGACGUCAUCCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCGCUGUGGCUCUGCAGACAACCCCAGCCUUGUCUAGCAUCUCGAUAAUUGCUUAAUCGGUGAAGAAGUGAAUUAGGUGCUGACAUUUUCCAGUUUCAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.78%
ME_num:
MEP:
17.48%
HE_num:
HEP:
33.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.86
Avg Expression:
29.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.41677798011345 | 7.21699873372808e-07 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.23451260768279 | 8.30401566898381e-08 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.43690669357969 | 1.79806039932476e-12 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.32665592429372 | 2.12966745470467e-08 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.0493776084256 | 0.000455657795264101 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.0319908113987 | 0.00339579772003261 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.57289000682765 | 2.39681798210064e-12 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.11546194941799 | 0.00257603068551393 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.01094821661235 | 0.0350806145959388 |
| 10 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -2.15171452146229 | 0.000666161953611372 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.40242897266169 | 1.213947301109e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.01973163878384 | 0.0234505874521059 |