Chr:
Chr4
Start:
18745391
End:
18746824
Strand:
+
Ref_name:
LOC112938602
Sequence
(XR_003241763.1):
ACCUGUAGUUUUGUGAUAAAAGUAGACACUAAAUCUGUAGUUUUGUGAAAUAAGCUCUUAAAUCUGUAGUUUUGUGAUAAAUUGUGCAAAAUAACUGCAGUUUUGUGAAAUUUACUCAUUGGUUUAUUUUUGGGCUUUUAAUUUAUGGUACUCCUACCAUUCAGUCGAGCAAGCUAUUUCUUCAAUAAUGUACCAGUAGGCAUGCCACUGUGUCGCACCUAUUUUUGUAGCGUUGUUUUAGUAUGAUGAUAACAAUGGCGAUUUUGUAAAUUUUAUCAAGUGCCAGUAAGAACGUUUAUUAAAAUCAUAGCUGUUUCAUUGUUUCUGUUUUCCAGAUCCAUGCCAUCAAGAUUUGACUUUUUUUGCCAUUCUUGUCAGGUCCAUCAUGUCUCCAAGAGUACGUUCACACAAUUUUGCAGAUUAGCAAUGUGAUACAGCUAUGAUGGUCCAGAUCCAACUCCGCUGUACUUCAGCACGUCUUCCACAGAAGCGAAUGUAGUGGAAGGCAACAUGGAAUGCUGGAAUGAUCCUUGGUACUGUCAGGCACUAGAGACCGGCUCUCAAUUGUGGUUGCCCAUGUCUUGAGAGUGUGGGGCUAAAGAGAUGUCUUAAAGAGGGAGUAUUUUGUAAAGAACAAGCUUGUAAGUAAUUUAAAUGCUUUUUUUUUUUGCAGAAGAGACCACAAACUUGUAAGUAACUUGCUAUGCUACAGGCAAAAAUUUAGUUGUUCCCAUGCGUACCAAAGAAAAAAAAAGCAGGUACAGCAACUUUCUCAGGAGGGGAGCAGAAUUUCACUUGAUACUGGAUUUGUUAUUUGGUAGUAGUAGCAUGUUAUUUCUCGCUUUUCAUGUCCUUUUGUUAUUUUGAUGUUUGACUCACCGUUUGUUUUUGUUUUUCUCUGGUCACAGUUUCAAGACAUUUAAGUGGAUGAACACACUUCGGCAUCCGAACUAGAAUGCUUCCAAUAGGCUGUAGAAACAAGGAGCCGCUUCUGUACUCCUUAACUGUUUUUUGACACUGCCAGAGAUAACAGUGACUCCAGAAUUCCACAGCAAUUAGGAUGCUGAGUUUUAGCAUUUCGGUUCUGAGUUCAGGCAGCAAAAAAACUCAAAUUUUGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.6%
ME_num:
MEP:
61.59%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.77
Avg Expression:
1.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.97309632671388 | 4.3992150502149e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.92676995643301 | 1.29948913259295e-07 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.71235321043264 | 1.49835009294233e-06 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.93673651164759 | 0.000154354251693397 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.80274682825226 | 1.0204497340409e-05 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.36242697834057 | 3.18783627416032e-08 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.26045326469801 | 0.000550114898607698 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.48526700481203 | 4.56167405544398e-10 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.53382302397101 | 2.20731570053323e-05 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.31600944157818 | 1.17712913041263e-09 |
11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.56662306683567 | 1.86771074255532e-05 |
12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.48457865614594 | 2.19063964630999e-09 |
13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.20379248203751 | 6.97532177692274e-11 |